Pre_GI Gene

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Host: NC_007333 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_007333:1743890 Thermobifida fusca YX, complete genome

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.


StartEndLengthCDS descriptionQuickGO ontologyBLASTP
174389017450381149putative acyl-CoA dehydrogenaseQuickGO ontologyBLASTP
17452531745615363hypothetical proteinBLASTP
174573017472471518Tyrosine protein kinaseSerinethreonine protein kinaseQuickGO ontologyBLASTP
17472951747600306hypothetical protein
17478861748263378hypothetical protein
17486151748971357hypothetical protein
174922717506331407xanthineuracil permeaseQuickGO ontologyBLASTP
17510781751803726hypothetical proteinBLASTP
175220317533841182thiolaseQuickGO ontologyBLASTP
17534141753851438similar to Arsenate reductase and related proteins glutaredoxin familyQuickGO ontologyBLASTP
17539501754807858similar to Cytochrome c biogenesis proteinQuickGO ontologyBLASTP
17549971755836840similar to Protein-disulfide isomeraseQuickGO ontologyBLASTP
17558481756183336hypothetical protein
17562741756813540hypothetical protein
17568341757790957ribonuclease ZQuickGO ontologyBLASTP
17577651758466702rare lipoprotein AQuickGO ontologyBLASTP
17586231759084462heat shock protein class IQuickGO ontologyBLASTP
175922617627533528hypothetical proteinBLASTP
176292617684755550similar to Acetylpropionyl-CoA carboxylase alpha subunitQuickGO ontologyBLASTP
17685861769101516hypothetical protein
17693091769749441hypothetical protein
176996217714791518hypothetical proteinBLASTP
17715641772097534hypothetical protein
17722571772670414ankyrinQuickGO ontologyBLASTP
17730731773945873hypothetical proteinBLASTP
17739471774435489hypothetical proteinBLASTP
17744391774780342hypothetical protein
17747621775568807hypothetical proteinBLASTP
17755791776373795putative hydrolaseQuickGO ontologyBLASTP
17764051777208804AP endonuclease family 1Exodeoxyribonuclease III xthQuickGO ontologyBLASTP
177736717787041338hypothetical proteinBLASTP
17794261780289864arginaseQuickGO ontologyBLASTP
17804701781141672putative enoyl-CoA hydrataseisomerase family proteinQuickGO ontologyBLASTP
17812651782239975hypothetical proteinBLASTP
178241717839491533putative acyl-CoA synthetaseQuickGO ontologyBLASTP
17839601784244285pterin-4-alpha-carbinolamine dehydrataseQuickGO ontologyBLASTP
17847071785180474hypothetical protein
17852191785662444hypothetical proteinBLASTP
178594017871241185hypothetical protein
17879581788272315hypothetical protein
178867017905261857PASProtein phosphatase 2C-likeGAFQuickGO ontologyBLASTP
179069417917251032putative integraserecombinaseQuickGO ontologyBLASTP
17922441792660417Low molecular weight phosphotyrosine protein phosphataseQuickGO ontologyBLASTP
179264717937351089Arsenical-resistance protein ACR3QuickGO ontologyBLASTP
17937321794109378regulatory protein ArsRQuickGO ontologyBLASTP
17941871794618432hypothetical proteinBLASTP
179526917964651197hypothetical proteinBLASTP
17965531797314762putative uvrA-like proteinQuickGO ontologyBLASTP
179732217985301209putative excision nuclease ABC subunitQuickGO ontologyBLASTP
17986521798945294uvrA-like proteinQuickGO ontologyBLASTP
17992771799687411hypothetical proteinBLASTP
18001281800823696hypothetical protein
180088718024521566similar to Outer membrane protein and related peptidoglycan-associated lipoproteinsQuickGO ontologyBLASTP
180269518039661272hypothetical proteinBLASTP
180410918052001092putative oxidoreductaseQuickGO ontologyBLASTP
18056791806143465leucine-rich repeat family protein extensin family proteinQuickGO ontology
18061011806532432regulatory protein ArsRQuickGO ontologyBLASTP
18066171807588972arsenite efflux pumpQuickGO ontologyBLASTP
18080551808657603hypothetical protein
18088721809480609hypothetical proteinBLASTP
181023618114621227hypothetical proteinBLASTP
18116151811989375hypothetical proteinBLASTP
18121961812939744hypothetical protein
181303018144661437putative sugar kinase proteinQuickGO ontologyBLASTP
181449818169272430Conserved hypothetical protein 374QuickGO ontology
181708118183881308hypothetical proteinBLASTP
181956718213511785CRISPR-associated TM1811 family proteinQuickGO ontologyBLASTP
182134818224961149similar to Uncharacterized protein predicted to be involved in DNA repair RAMP superfamilyQuickGO ontologyBLASTP
18224931823395903Protein of unknown function DUF324QuickGO ontologyBLASTP
18233881823867480hypothetical protein
182386418248651002CRISPR-associated TM1791 family proteinQuickGO ontologyBLASTP
182522518264601236CRISPR-associated TM1795 family proteinQuickGO ontologyBLASTP
182700318280581056hypothetical proteinBLASTP
18280811828344264hypothetical proteinBLASTP
18284471829103657hypothetical proteinBLASTP
18293761830374999Protein of unknown function DUF48QuickGO ontologyBLASTP
18303671831065699hypothetical proteinBLASTP
18310621831826765CRISPR-associated CT1976 family proteinQuickGO ontologyBLASTP
183182318329441122CRISPR-associated CT1975 family proteinQuickGO ontologyBLASTP
18329411833675735hypothetical proteinBLASTP
183367218353211650hypothetical proteinBLASTP
183590618387402835cRISPR-associated helicase Cas3 coreQuickGO ontologyBLASTP
18389431839158216BLASTP
18394281839733306hypothetical protein
18398301840453624CRISPR-associated CT1974 family proteinQuickGO ontologyBLASTP
18405001841237738CRISPR-associated CT1976 family proteinQuickGO ontologyBLASTP
184123418424271194CRISPR-associated CT1975 family proteinQuickGO ontologyBLASTP
18424241843068645hypothetical proteinBLASTP
184306518447321668hypothetical proteinBLASTP
184472218476342913CRISPR-associated helicase Cas3 coreQuickGO ontologyBLASTP
18491971849811615hypothetical proteinBLASTP
185060518517621158xylose isomeraseQuickGO ontologyBLASTP
185179118531851395xylulokinaseQuickGO ontologyBLASTP
185333918545921254putative xylose repressorQuickGO ontologyBLASTP
18548441855428585hypothetical proteinBLASTP
185547818582642787beta-glucosidaseQuickGO ontologyBLASTP
185829718595471251putative xylose repressorQuickGO ontologyBLASTP
185971318613861674ABC-type sugar transport system periplasmic componentQuickGO ontologyBLASTP
186139118624161026putative transport system integral membrane proteinQuickGO ontologyBLASTP
18624131863324912putative transport system integral membrane proteinQuickGO ontologyBLASTP
186396818667452778cellulose-binding family II bacterial typeQuickGO ontologyBLASTP
186681218691092298putative alpha-glucosidaseQuickGO ontologyBLASTP
186932118715822262hypothetical proteinBLASTP
187165718736481992beta-galactosidaseQuickGO ontologyBLASTP