Pre_GI: BLASTP Hits

Some Help

Query: NC_007333:1743890:1835906 Thermobifida fusca YX, complete genome

Start: 1835906, End: 1838740, Length: 2835

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015951:107360:1140161140161167872772Streptomyces violaceusniger Tu 4113 plasmid pSTRVI01, completeCRISPR-associated helicase Cas35e-132472
NC_013159:1422370:1428340142834014308382499Saccharomonospora viridis DSM 43017, complete genomeCRISPR-associated helicase Cas34e-106386
NC_013524:1150725:1150725115072511535352811Sphaerobacter thermophilus DSM 20745 chromosome 2, complete genomeCRISPR-associated helicase Cas32e-99364
NC_007775:723925:7396277396277423082682Synechococcus sp. JA-3-3Ab, complete genomeCRISPR-associated helicase Cas32e-82308
NC_008278:514600:5190645190645218652802Frankia alni ACN14a, complete genomehypothetical protein; putative DEAD/DEAH box helicase domain6e-73276
NC_016109:603829:6205116205116233722862Kitasatospora setae KM-6054, complete genomeputative CRISPR-associated helicase2e-70268
NC_007356:1165760:1208782120878212114752694Dehalococcoides sp. CBDB1, complete genomeputative CRISPR-associated helicase Cas31e-69265
NC_013890:1175931:1184632118463211873102679Dehalococcoides sp. GT chromosome, complete genomeCRISPR-associated helicase Cas31e-69265
NC_008054:745704:7546887546887574532766Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842, completeCRISPR-associated helicase Cas32e-69265
NC_014727:798191:8099868099868127512766Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,crispr-associated helicase cas32e-69264
NC_008529:735233:7468327468327495972766Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365, completeCRISPR-associated helicase4e-69263
NC_018720:1812000:1820832182083218239993168Bifidobacterium asteroides PRL2011 chromosome, complete genomeCRISPR-associated helicase Cas34e-69263
NC_015737:2146953:2151963215196321547312769Clostridium sp. SY8519, complete genomeputative helicase2e-67258
NC_008609:2518993:2531914253191425345532640Pelobacter propionicus DSM 2379, complete genomeCRISPR-associated helicase Cas35e-66253
NC_013510:3117837:3128254312825431311512898Thermomonospora curvata DSM 43183, complete genomeCRISPR-associated helicase Cas34e-65250
NC_012560:1677798:1699773169977317024782706Azotobacter vinelandii DJ, complete genomeCRISPR-associated helicase Cas3, core4e-65250
NC_021150:1677811:1699786169978617024912706Azotobacter vinelandii CA6, complete genomeCRISPR-associated helicase Cas3, core4e-65250
NC_015436:1287873:1293817129381712964352619Spirochaeta coccoides DSM 17374 chromosome, complete genomeCRISPR-associated helicase Cas33e-65250
NC_007164:775000:7834007834007862522853Corynebacterium jeikeium K411, complete genomehypothetical protein1e-64248
NC_015387:942974:9498269498269526002775Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeCRISPR-associated helicase Cas35e-64246
NC_008526:343445:3475193475193502872769Lactobacillus casei ATCC 334, complete genomeCRISPR-associated helicase6e-64246
NC_015389:481282:4862164862164893563141Coriobacterium glomerans PW2 chromosome, complete genomeCRISPR-associated helicase Cas31e-63245
NC_007333:1743890:1844722184472218476342913Thermobifida fusca YX, complete genomeCRISPR-associated helicase Cas3, core4e-63243
NC_013131:4422000:4432703443270344373254623Catenulispora acidiphila DSM 44928, complete genomeCRISPR-associated protein, Cse1 family7e-62239
NC_006361:4574536:4590706459070645934502745Nocardia farcinica IFM 10152, complete genomehypothetical protein2e-60234
NC_010610:795975:8050038050038077262724Lactobacillus fermentum IFO 3956, complete genomehypothetical protein4e-60233
NC_012912:1053618:1059035105903510616502616Dickeya zeae Ech1591, complete genomeCRISPR-associated helicase Cas34e-59230
NC_012590:977920:9836789836789864882811Corynebacterium aurimucosum ATCC 700975, complete genomeCRISPR-associated protein3e-57224
NC_015676:1663700:1675169167516916779222754Methanosalsum zhilinae DSM 4017 chromosome, complete genomeCRISPR-associated helicase Cas32e-56221
NC_015170:54000:5707057070599612892Deinococcus proteolyticus MRP plasmid pDEIPR03, complete sequenceCRISPR-associated helicase Cas36e-56219
NC_002932:1851070:1868933186893318715182586Chlorobium tepidum TLS, complete genomehypothetical protein4e-55217
NC_017186:6395435:6449931644993164522102280Amycolatopsis mediterranei S699 chromosome, complete genomeCRISPR-associated helicase Cas32e-54215
NC_014318:6395392:6449887644988764521662280Amycolatopsis mediterranei U32 chromosome, complete genomeCRISPR-associated helicase Cas32e-54215
NC_019673:1988853:2042190204219020449372748Saccharothrix espanaensis DSM 44229 complete genomeCRISPR-associated helicase Cas33e-52207
NC_013850:985331:9897249897249924172694Klebsiella variicola At-22 chromosome, complete genomeCRISPR-associated helicase Cas32e-50201
NC_013851:759500:7688657688657714982634Allochromatium vinosum DSM 180 chromosome, complete genomeCRISPR-associated helicase Cas32e-49198
NC_007643:185135:2063192063192090812763Rhodospirillum rubrum ATCC 11170, complete genomeCRISPR-associated helicase Cas3, core2e-47191
NC_014355:1461355:1466467146646714691962730Candidatus Nitrospira defluvii, complete genomeCRISPR-associated helicase Cas31e-46189
NC_010468:1029471:1036180103618010388462667Escherichia coli ATCC 8739, complete genomeCRISPR-associated helicase Cas33e-45184
NC_010473:2963951:2975117297511729777832667Escherichia coli str. K-12 substr. DH10B, complete genomeconserved protein, member of DEAD box family3e-45184
NC_000913:2873443:2882575288257528852412667Escherichia coli K12, complete genomeconserved protein, member of DEAD box family3e-45184
AC_000091:2872000:2883209288320928858752667Escherichia coli W3110 DNA, complete genomeconserved hypothetical protein, member of DEAD box family3e-45184
NC_012759:2757826:2768387276838727710532667Escherichia coli BW2952 chromosome, complete genomehypothetical protein3e-45184
NC_002939:1505701:1512324151232415149752652Geobacter sulfurreducens PCA, complete genomeCRISPR-associated helicase Cas33e-44181
NC_009800:2889928:2901786290178629044522667Escherichia coli HS, complete genomeCRISPR-associated helicase Cas32e-43178
NC_002935:2292835:2302097230209723047272631Corynebacterium diphtheriae NCTC 13129, complete genomePutative helicase1e-40169
NC_016782:2235000:2245769224576922483992631Corynebacterium diphtheriae 241 chromosome, complete genomeCRISPR-associated protein5e-39163
NC_016786:2235731:2246368224636822489982631Corynebacterium diphtheriae HC01 chromosome, complete genomeCRISPR-associated protein5e-39163
NC_015966:521703:5467875467875490452259Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomeCRISPR-associated helicase Cas34e-30134
NC_008340:1075500:1085465108546510880802616Alkalilimnicola ehrlichei MLHE-1, complete genomeCRISPR-associated helicase Cas33e-28127
NC_016610:2489415:2495937249593724980212085Tannerella forsythia ATCC 43037 chromosome, complete genomeCRISPR-associated helicase Cas38e-21103
NC_010424:1356000:1362881136288113652682388Candidatus Desulforudis audaxviator MP104C, complete genomeCRISPR-associated helicase Cas39e-21102
NC_015571:290355:3024493024493047522304Porphyromonas gingivalis TDC60, complete genomeCRISPR-associated helicase Cas37e-20100
NC_002950:2098454:2106124210612421084602337Porphyromonas gingivalis W83, complete genomeCRISPR-associated helicase Cas36e-1893.6
NC_013216:921377:9279929279929302262235Desulfotomaculum acetoxidans DSM 771, complete genomeCRISPR-associated helicase Cas32e-1792
NC_015680:1275252:1275252127525212773302079Pyrococcus yayanosii CH1 chromosome, complete genomeCRISPR-associated helicase Cas3 domain-containing protein3e-1791.3
NC_000961:135493:1538931538931559652073Pyrococcus horikoshii OT3, complete genomehypothetical protein6e-1790.5
NC_010803:483713:4952324952324974842253Chlorobium limicola DSM 245, complete genomeCRISPR-associated helicase Cas35e-1687.4
NC_011296:1039749:1058944105894410605751632Thermodesulfovibrio yellowstonii DSM 11347, complete genomeCRISPR-associated helicase Cas33e-1481.6
NC_015966:1316901:1323321132332113254982178Rhodothermus marinus SG0.5JP17-172 chromosome, complete genomemetal dependent phosphohydrolase2e-1481.6
NC_015573:2975000:2983739298373929862492511Desulfotomaculum kuznetsovii DSM 6115 chromosome, complete genomeCRISPR-associated helicase Cas37e-1480.1
NC_009486:1103915:1112028111202811143192292Thermotoga petrophila RKU-1 chromosome, complete genomeCRISPR-associated helicase Cas31e-1379.3
NC_015975:1056731:1070620107062010729322313Lactobacillus ruminis ATCC 27782 chromosome, complete genomeCRISPR-associated helicase Cas31e-1379.3
NC_016051:460624:4687704687704713762607Thermococcus sp. AM4 chromosome, complete genomeCRISPR-associated helicase Cas36e-1377
NC_012440:1249941:1259969125996912622182250Persephonella marina EX-H1, complete genomecrispr-associated helicase Cas39e-1376.6
NC_014150:1423758:1423758142375814260522295Brachyspira murdochii DSM 12563 chromosome, complete genomeCRISPR-associated helicase Cas31e-1275.9
NC_013510:1023348:1039357103935710424403084Thermomonospora curvata DSM 43183, complete genomemetal dependent phosphohydrolase2e-1275.1
NC_015416:2838020:2843201284320128456032403Methanosaeta concilii GP-6 chromosome, complete genomeCRISPR-associated helicase Cas32e-1275.1
NC_000918:246792:2467922467922489812190Aquifex aeolicus VF5, complete genomehypothetical protein3e-1275.1
NC_000916:983500:1001172100117210036642493Methanothermobacter thermautotrophicus str. Delta H, completehypothetical protein4e-1274.3
NC_009973:77518:9643396433988472415Herpetosiphon aurantiacus ATCC 23779 plasmid pHAU01, completeCRISPR-associated helicase Cas34e-1274.3
NC_015865:685882:6936206936206959262307Thermococcus sp. 4557 chromosome, complete genomeCRISPR-associated helicase Cas3-like protein1e-1172.8
NC_000917:40111:6883068830711092280Archaeoglobus fulgidus DSM 4304, complete genomeATP-dependent RNA helicase, putative2e-1172
NC_020411:583503:5965795965795988702292Hydrogenobaculum sp. HO, complete genomeCRISPR-associated helicase Cas33e-1171.6
NC_015587:583530:5966065966065988972292Hydrogenobaculum sp. SHO chromosome, complete genomeCRISPR-associated helicase Cas33e-1171.6
NC_015557:583475:5965515965515988422292Hydrogenobaculum sp. 3684 chromosome, complete genomeCRISPR-associated helicase Cas33e-1171.6
NC_020126:10091703:1010406510104065101063772313Myxococcus stipitatus DSM 14675, complete genomeATP-dependent RNA helicase3e-1171.2
NC_019978:922978:9399719399719423132343Halobacteroides halobius DSM 5150, complete genomeCRISPR-associated helicase Cas31e-1069.7
NC_013849:1595924:1614550161455016161781629Ferroglobus placidus DSM 10642 chromosome, complete genomeCRISPR-associated helicase Cas36e-0963.5
NC_018145:683874:6976696976697011093441Zymomonas mobilis subsp. mobilis ATCC 29191 chromosome, completeCRISPR-associated helicase Cas3 family9e-0963.2
NC_020134:2067476:2074883207488320770962214Clostridium stercorarium subsp. stercorarium DSM 8532, completeCRISPR-associated helicase Cas31e-0862.8
NC_014206:1467000:1474954147495414771312178Geobacillus sp. C56-T3 chromosome, complete genomeCRISPR-associated helicase Cas32e-0862.4
NC_015680:841783:8522428522428538221581Pyrococcus yayanosii CH1 chromosome, complete genomeCRISPR-associated helicase Cas32e-0862
NC_009921:1668306:1682199168219916846342436Frankia sp. EAN1pec, complete genomeCRISPR-associated helicase Cas32e-0861.6
NC_005823:1105524:1130506113050611327582253Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130ATP-dependent RNA helicase6e-0860.5
NC_004342:3164500:3167477316747731697352259Leptospira interrogans serovar Lai str. 56601 chromosome I,ATP-dependent RNA helicase7e-0860.5
NC_011978:699500:7103537103537115461194Thermotoga neapolitana DSM 4359, complete genomeCRISPR-associated helicase, Cas3 family7e-0757
NC_013894:1:1428214282159881707Thermocrinis albus DSM 14484 chromosome, complete genomeCRISPR-associated helicase Cas38e-0756.6
NC_008095:8837612:8867872886787288701122241Myxococcus xanthus DK 1622, complete genomeCRISPR-associated helicase Cas31e-0656.2
NC_014961:969500:9790069790069807781773Desulfurococcus mucosus DSM 2162 chromosome, complete genomeCRISPR-associated helicase Cas32e-0655.1
NC_013223:1848689:1869714186971418720562343Desulfohalobium retbaense DSM 5692, complete genomeCRISPR-associated helicase Cas33e-0654.7
NC_016906:3980122:3990842399084239932322391Gordonia polyisoprenivorans VH2 chromosome, complete genomeCRISPR-associated helicase Cas38e-0653.5