Pre_GI Gene

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Host: NC_004129 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_004129:5481629 Pseudomonas fluorescens Pf-5, complete genome

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.


This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
54816295482561933hypothetical proteinBLASTP
54825585483334777endonucleaseexonucleasephosphatase family proteinQuickGO ontologyBLASTP
548333154845241194phospholipase family proteinQuickGO ontologyBLASTP
54849345485197264hypothetical protein
54852055485960756prolyl oligopeptidase family proteinQuickGO ontologyBLASTP
548595054870471098hypothetical proteinBLASTP
54875765487755180hypothetical proteinBLASTP
548779754889091113sensor histidine kinaseQuickGO ontologyBLASTP
548995154918371887hypothetical proteinBLASTP
549183454931711338site-specific recombinase phage integrase familyQuickGO ontologyBLASTP
5493511549358676tRNA-LysQuickGO ontologyBLASTP
54936505494351702exsB proteinQuickGO ontologyBLASTP
54943535495000648radical activating enzymeQuickGO ontologyBLASTP
54951675495979813hypothetical proteinBLASTP
54959865496483498peptidoglycan-associated lipoproteinQuickGO ontologyBLASTP
549653754978381302translocation protein TolB precursorQuickGO ontologyBLASTP
549783554988961062biopolymer transport protein TolAQuickGO ontologyBLASTP
54988965499348453biopolymer transport protein TolRQuickGO ontologyBLASTP
54993625500057696tolQ proteinQuickGO ontologyBLASTP
55000475500514468conserved hypothetical protein subfamily putativeQuickGO ontologyBLASTP
550065355017111059Holliday junction DNA helicase RuvBQuickGO ontologyBLASTP
55017125502320609Holliday junction DNA helicase motor proteinQuickGO ontologyBLASTP
55024355502959525Holliday junction resolvaseQuickGO ontologyBLASTP
55030895503835747hypothetical proteinBLASTP
550394855057231776aspartyl-tRNA synthetaseQuickGO ontologyBLASTP