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Query: NC_004129:5481629:5493511 Pseudomonas fluorescens Pf-5, complete genome

Start: 5493511, End: 5493586, Length: 76

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007005:830467:83537283537283544776Pseudomonas syringae pv. syringae B728a, complete genometRNA-Lys1e-0651.6
NC_015556:4074367:40989984098998409907376Pseudomonas fulva 12-X chromosome, complete genometRNA-Lys1e-0651.6
NC_009439:860571:86329186329186336676Pseudomonas mendocina ymp, complete genometRNA-Lys1e-0651.6
NC_004578:4465247:44764344476434447650976Pseudomonas syringae pv. tomato str. DC3000, complete genometRNA-Lys1e-0651.6
NC_004578:895019:89897289897289904776Pseudomonas syringae pv. tomato str. DC3000, complete genometRNA-Lys1e-0651.6
NC_005773:866157:87106387106387113876Pseudomonas syringae pv. phaseolicola 1448A, complete genometRNA-Lys1e-0651.6
NC_008027:4953432:49761584976158497623376Pseudomonas entomophila L48, complete genometRNA-Lys1e-0651.6
NC_018080:4465618:44791734479173447924876Pseudomonas aeruginosa DK2 chromosome, complete genometRNA-Lys7e-0649.3
NC_002516:1031386:10603561060356106043176Pseudomonas aeruginosa PAO1, complete genometRNA-Lys7e-0649.3