Pre_GI: BLASTP Hits

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Query: NC_004129:5481629:5499362 Pseudomonas fluorescens Pf-5, complete genome

Start: 5499362, End: 5500057, Length: 696

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004578:4465247:448230844823084483003696Pseudomonas syringae pv. tomato str. DC3000, complete genometolQ protein7e-118422
NC_018080:4465618:448506244850624485757696Pseudomonas aeruginosa DK2 chromosome, complete genomeTolQ protein9e-115412
NC_011770:4763506:478384847838484784543696Pseudomonas aeruginosa LESB58, complete genomeTolQ protein9e-115412
NC_008463:4566976:459699245969924597687696Pseudomonas aeruginosa UCBPP-PA14, complete genomeTolQ protein9e-115412
NC_002516:1031386:105384810538481054543696Pseudomonas aeruginosa PAO1, complete genomeTolQ protein9e-115412
NC_008340:277223:278688278688279395708Alkalilimnicola ehrlichei MLHE-1, complete genomeMotA/TolQ/ExbB proton channel8e-67253
NC_007484:130896:153501153501154178678Nitrosococcus oceani ATCC 19707, complete genomeMotA/TolQ/ExbB proton channel2e-60231
NC_014315:114151:138261138261138941681Nitrosococcus watsoni C-113 chromosome, complete genomeprotein TolQ4e-60231
NC_010939:321492:342684342684343364681Actinobacillus pleuropneumoniae serovar 7 str. AP76, completecolicin transport protein TolQ1e-59229
NC_009053:313779:333070333070333750681Actinobacillus pleuropneumoniae L20, complete genomecolicin transport protein TolQ3e-59228
NC_010278:315941:337870337870338550681Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,colicin transport protein4e-59227
NC_016831:2209834:223116522311652231857693Salmonella enterica subsp. enterica serovar Gallinarum/pullorumTolQ protein6e-59227
NC_010102:2287934:230996723099672310659693Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-59227
NC_014311:2733897:273675727367572737449693Ralstonia solanacearum PSI07 chromosome, complete genomeprotein tolQ, essential components of the Tol-Pal system1e-58226
NC_010682:701912:719819719819720511693Ralstonia pickettii 12J chromosome 1, complete sequenceprotein TolQ2e-58225
NC_012856:737170:757655757655758347693Ralstonia pickettii 12D chromosome 1, complete genomeprotein TolQ3e-58224
NC_018012:1935500:195486619548661955540675Thiocystis violascens DSM 198 chromosome, complete genomeCell division and transport-associated protein TolQ4e-55214
NC_008060:341851:356911356911357588678Burkholderia cenocepacia AU 1054 chromosome 1, complete sequenceMotA/TolQ/ExbB proton channel1e-54213
NC_011000:3493575:349671934967193497396678Burkholderia cenocepacia J2315 chromosome 1, complete sequenceputative TolQ transport transmembrane protein5e-54211
NC_017223:3608749:360874936087493609429681Bordetella pertussis CS chromosome, complete genomeputative TolQ-like translocation protein3e-51201
NC_002929:3568106:356856435685643569244681Bordetella pertussis Tohama I, complete genomeputative TolQ-like translocation protein3e-51201
NC_007973:2888824:291162629116262912309684Ralstonia metallidurans CH34 chromosome 1, complete sequenceMotA/TolQ/ExbB proton channel7e-50197
NC_014924:725380:749379749379750155777Pseudoxanthomonas suwonensis 11-1 chromosome, complete genomeprotein TolQ1e-49196
NC_015726:2817352:283695728369572837640684Cupriavidus necator N-1 chromosome 1, complete sequencebiopolymer transport protein ExbB3e-49194
NC_008781:3056407:307666730766673077359693Polaromonas naphthalenivorans CJ2, complete genomeMotA/TolQ/ExbB proton channel7e-49193
NC_004757:230541:249426249426250130705Nitrosomonas europaea ATCC 19718, complete genomeMotA/TolQ/ExbB proton channel family2e-48192
NC_008783:145305:159746159746160453708Bartonella bacilliformis KC583, complete genomeprotein TolQ5e-40164
NC_008800:3955284:397301039730103973723714Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,MotA/TolQ/ExbB proton channel family protein7e-29127
NC_008011:860000:874438874438875115678Lawsonia intracellularis PHE/MN1-00, complete genomeBiopolymer transport proteins9e-29127
NC_010581:561579:582756582756583496741Beijerinckia indica subsp. indica ATCC 9039, complete genomeMotA/TolQ/ExbB proton channel2e-28125
NC_015224:3820338:3851273385127338522831011Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,MotA/TolQ/ExbB proton channel family protein2e-28125
NC_009708:692508:696416696416697129714Yersinia pseudotuberculosis IP 31758 chromosome, complete genometonB-system energizer ExbB4e-27121
NC_010465:733916:7364627364627374991038Yersinia pseudotuberculosis YPIII, complete genometonB-system energizer ExbB4e-27121
NC_003143:741169:745023745023745736714Yersinia pestis CO92, complete genomeMotA/TolQ/ExbB proton channel family protein6e-27120
NC_011296:909558:929880929880930509630Thermodesulfovibrio yellowstonii DSM 11347, complete genomeTolQ protein7e-27120
NC_010159:259695:277318277318278310993Yersinia pestis Angola, complete genometonB-system energizer ExbB2e-26119
NC_005810:3333000:3336617333661733376781062Yersinia pestis biovar Microtus str. 91001, complete genomeTonB complex protein2e-26119
NC_004088:3859173:3876796387679638778571062Yersinia pestis KIM, complete genomeTonB complex protein2e-26119
NC_014029:792719:7962497962497972801032Yersinia pestis Z176003 chromosome, complete genomeMotA/TolQ/ExbB proton channel family protein2e-26119
NC_008150:3430000:3447678344767834487151038Yersinia pestis Antiqua, complete genomeMotA/TolQ/ExbB proton channel family protein2e-26119
NC_008149:650706:6542366542366552731038Yersinia pestis Nepal516, complete genomeMotA/TolQ/ExbB proton channel family protein2e-26119
NC_017154:734875:7384057384057394421038Yersinia pestis D106004 chromosome, complete genomeMotA/TolQ/ExbB proton channel family protein2e-26119
NC_017160:737000:7405847405847416211038Yersinia pestis D182038 chromosome, complete genomeMotA/TolQ/ExbB proton channel family protein2e-26119
NC_009381:522731:5262615262615272981038Yersinia pestis Pestoides F chromosome, complete genomeMotA/TolQ/ExbB proton channel family protein2e-26119
NC_010634:3905369:3927034392703439280711038Yersinia pseudotuberculosis PB1/+, complete genometonB-system energizer ExbB2e-26119
NC_006155:3992818:4015577401557740166141038Yersinia pseudotuberculosis IP 32953, complete genomepossible MotA/TolQ/ExbB proton channel family protein2e-26119
NC_017265:3724500:3742156374215637431931038Yersinia pestis biovar Medievalis str. Harbin 35 chromosome,membrane spanning protein in TonB-ExbB-ExbD complex2e-26119
NC_017168:341233:3595663595663606031038Yersinia pestis A1122 chromosome, complete genomeMotA/TolQ/ExbB proton channel family protein2e-26119
NC_007613:2981829:300221230022123002946735Shigella boydii Sb227, complete genomeExbB4e-25114
NC_013209:2414500:242313824231382423914777Acetobacter pasteurianus IFO 3283-01, complete genomeExbB/TolQ/MotA3e-22105
NC_017100:2414075:242434524243452425121777Acetobacter pasteurianus IFO 3283-03, complete genomeExbB/TolQ/MotA3e-22105
NC_017108:2413000:242168224216822422458777Acetobacter pasteurianus IFO 3283-12, complete genomeExbB/TolQ/MotA3e-22105
NC_017111:2413000:242170024217002422476777Acetobacter pasteurianus IFO 3283-32, complete genomeExbB/TolQ/MotA3e-22105
NC_017121:2413000:242168724216872422463777Acetobacter pasteurianus IFO 3283-07, complete genomeExbB/TolQ/MotA3e-22105
NC_017125:2415500:242432524243252425101777Acetobacter pasteurianus IFO 3283-22, complete genomeExbB/TolQ/MotA3e-22105
NC_017146:2416000:242436724243672425143777Acetobacter pasteurianus IFO 3283-26, complete genomeExbB/TolQ/MotA3e-22105
NC_014217:800406:8004068004068014791074Starkeya novella DSM 506 chromosome, complete genometonB-system energizer ExbB2e-22105
NC_014118:2417838:243445924344592435367909Burkholderia sp. CCGE1002 chromosome chromosome 2, completeMotA/TolQ/ExbB proton channel1e-21103
NC_014540:2908912:291703929170392917779741Burkholderia sp. CCGE1003 chromosome 2, complete sequenceMotA/TolQ/ExbB proton channel1e-20100
NC_004556:1:114441144412208765Xylella fastidiosa Temecula1, complete genomebiopolymer transport ExbB protein7e-21100
NC_010577:1:113351133512099765Xylella fastidiosa M23, complete genomeMotA/TolQ/ExbB proton channel7e-21100
NC_010943:9294:113881138812149762Stenotrophomonas maltophilia K279a, complete genomeputative biopolymer transport exbB protein6e-21100
NC_014733:107394:132519132519133229711Methylovorus sp. MP688 chromosome, complete genomemota/tolq/exbb proton channel1e-2099.8
NC_011071:10842:116061160612367762Stenotrophomonas maltophilia R551-3, complete genomeMotA/TolQ/ExbB proton channel1e-2099.8
NC_002488:1:114641146412228765Xylella fastidiosa 9a5c, complete genomebiopolymer transport ExbB protein2e-2099
NC_008027:5576458:559542955954295596151723Pseudomonas entomophila L48, complete genomebiopolymer transport protein ExbB5e-2098.2
NC_020126:1830147:183711518371151837798684Myxococcus stipitatus DSM 14675, complete genomeMotA/TolQ/ExbB proton channel family protein6e-2097.8
NC_008095:1697157:170613717061371706820684Myxococcus xanthus DK 1622, complete genometransporter, MotA/TolQ/ExbB proton channel family1e-1996.7
NC_011992:1505106:150950415095041510220717Acidovorax ebreus TPSY, complete genomeMotA/TolQ/ExbB proton channel2e-1995.9
NC_015711:346436:355393355393356076684Myxococcus fulvus HW-1 chromosome, complete genomeMotA/TolQ/ExbB proton channel family protein3e-1995.1
NC_014910:2585747:260126926012692601988720Alicycliphilus denitrificans BC chromosome, complete genomemota/tolq/exbb proton channel3e-1995.1
NC_014932:1314881:135059913505991351420822Bartonella clarridgeiae 73, complete genomebiopolymer transport exbB protein3e-1995.1
NC_007953:1088933:109015910901591090911753Burkholderia xenovorans LB400 chromosome 3, complete sequenceMotA/TolQ/ExbB proton channel6e-1994.4
NC_009348:1968826:196882619688261969578753Aeromonas salmonicida subsp. salmonicida A449, complete genomeMotA/TolQ/ExbB proton channel family protein7e-1994
NC_008783:177161:184498184498185469972Bartonella bacilliformis KC583, complete genomeputative tonB-system energizer ExbB1e-1893.6
NC_015318:981989:981989981989982564576Hippea maritima DSM 10411 chromosome, complete genomeMotA/TolQ/ExbB proton channel3e-1892
NC_013421:4714478:475475847547584755474717Pectobacterium wasabiae WPP163, complete genomeMotA/TolQ/ExbB proton channel2e-1686.3
NC_009053:1785447:179799017979901798658669Actinobacillus pleuropneumoniae L20, complete genomebiopolymer transport ExbB protein1e-1686.3
NC_010939:1809446:182187818218781822546669Actinobacillus pleuropneumoniae serovar 7 str. AP76, completebiopolymer transport ExbB protein1e-1686.3
NC_010278:1749579:175871617587161759384669Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,biopolymer transport ExbB protein1e-1686.3
NC_014323:3195178:321424532142453214976732Herbaspirillum seropedicae SmR1 chromosome, complete genomebiopolymer transport transmembrane protein2e-1685.9
NC_006677:1391984:1411734141173414128341101Gluconobacter oxydans 621H, complete genomeBiopolymer transport ExbB protein2e-1582.8
NC_012440:373863:380380380380380844465Persephonella marina EX-H1, complete genomebiopolymer transport protein ExbB4e-1581.6
NC_008576:4467745:447472144747214475332612Magnetococcus sp. MC-1, complete genomeMotA/TolQ/ExbB proton channel6e-1580.9
NC_017511:1257663:125766312576631258325663Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomeExbB oriteub7e-1580.9
NC_002946:1342857:134285713428571343567711Neisseria gonorrhoeae FA 1090, complete genomeExbB8e-1580.5
NC_016024:156000:160623160623161378756Candidatus Chloracidobacterium thermophilum B chromosome chromosomeouter membrane transport energization protein ExbB1e-1479.7
NC_002977:2407392:2429302242930224311251824Methylococcus capsulatus str. Bath, complete genomeMotA/TolQ/ExbB proton channel family domain protein6e-1374.3
NC_011145:306623:314420314420315178759Anaeromyxobacter sp. K, complete genomeMotA/TolQ/ExbB proton channel2e-1273.2
NC_011891:315182:322974322974323732759Anaeromyxobacter dehalogenans 2CP-1, complete genomeMotA/TolQ/ExbB proton channel2e-1273.2
NC_007760:308500:311883311883312641759Anaeromyxobacter dehalogenans 2CP-C, complete genomeMotA/TolQ/ExbB proton channel2e-1272.8
NC_014761:1321187:134194013419401342560621Oceanithermus profundus DSM 14977 chromosome, complete genomemota/tolq/exbb proton channel3e-1168.9
NC_014734:1428282:143301114330111433832822Paludibacter propionicigenes WB4 chromosome, complete genomeouter membrane transport energization protein exbb7e-1064.3
NC_004917:340997:342217342217342654438Helicobacter hepaticus ATCC 51449, complete genomebiopolymer transport protein6e-1064.3
NC_014655:3615426:361542636154263616247822Leadbetterella byssophila DSM 17132 chromosome, complete genomeouter membrane transport energization protein exbb8e-1063.9
NC_009715:399159:401736401736402164429Campylobacter curvus 525.92 chromosome, complete genomeTonB-system energizer ExbB9e-1063.9
NC_014166:2319447:233720023372002337760561Arcobacter nitrofigilis DSM 7299 chromosome, complete genomeMotA/TolQ/ExbB proton channel2e-0962.4
NC_012039:412837:444415444415444846432Campylobacter lari RM2100, complete genomeTonB system transport protein ExbB1e-0860.5
NC_017192:2114433:212071421207142121274561Arcobacter sp. L, complete genomebiopolymer transport protein ExbB1e-0860.1
NC_002977:652481:668226668226668840615Methylococcus capsulatus str. Bath, complete genomeMotA/TolQ/ExbB proton channel family domain protein1e-0860.1
NC_008599:1489868:149978014997801500379600Campylobacter fetus subsp. fetus 82-40, complete genomeExbB olQ family transport protein2e-0859.7
NC_009850:1601982:160509516050951605655561Arcobacter butzleri RM4018, complete genomebiopolymer transport protein ExbB1e-0859.7
NC_017187:1511567:152060215206021521162561Arcobacter butzleri ED-1, complete genomebiopolymer transport protein ExbB1e-0859.7
NC_013062:421779:424849424849425712864Flavobacteriaceae bacterium 3519-10, complete genomeMotA/TolQ/ExbB proton channel family protein2e-0859.3
NC_014315:2659479:2679240267924026806851446Nitrosococcus watsoni C-113 chromosome, complete genomeMotA/TolQ/ExbB proton channel5e-0858.2
NC_020409:77414:8027380273817001428Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeMotA/TolQ/ExbB proton channel1e-0757
NC_015276:2171355:217382821738282174442615Marinomonas mediterranea MMB-1 chromosome, complete genomeMotA/TolQ/ExbB proton channel1e-0756.6
NC_014541:1280835:1296344129634412977021359Ferrimonas balearica DSM 9799 chromosome, complete genomeouter membrane transport energization protein ExbB1e-0756.6
NC_013446:3209000:322514132251413225773633Comamonas testosteroni CNB-2, complete genomeMotA/TolQ/ExbB proton channel4e-0755.1
NC_016147:1788219:178865217886521789281630Pseudoxanthomonas spadix BD-a59 chromosome, complete genomebiopolymer transport protein5e-0754.7
NC_006138:3355028:3362945336294533643361392Desulfotalea psychrophila LSv54, complete genomesimilar to transport protein TolQ6e-0754.3
NC_015851:181721:185132185132185887756Acidithiobacillus caldus SM-1 megaplasmid, complete sequenceMotA/TolQ/ExbB proton channel1e-0653.5
NC_020409:77414:796547965480286633Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeMotA/TolQ/ExbB proton channel2e-0652.8
NC_007404:387827:3878273878273894941668Thiobacillus denitrificans ATCC 25259, complete genomeputative transport protein ExbB22e-0652.8
NC_013520:91961:113003113003113614612Veillonella parvula DSM 2008, complete genomeMotA/TolQ/ExbB proton channel3e-0652
NC_018607:1251357:125680412568041257433630Brachyspira pilosicoli B2904 chromosome, complete genomebiopolymer transport protein ExbB4e-0651.6
NC_015501:556994:577904577904578578675Porphyromonas asaccharolytica DSM 20707 chromosome, completeMotA/TolQ/ExbB proton channel6e-0651.2
NC_011206:863987:874407874407875111705Acidithiobacillus ferrooxidans ATCC 53993, complete genomeMotA/TolQ/ExbB proton channel6e-0651.2
NC_011761:684969:695389695389696093705Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeMotA/TolQ/ExbB proton channel family protein6e-0651.2
NC_017192:2153461:217108621710862171514429Arcobacter sp. L, complete genomebiopolymer transport protein5e-0651.2
NC_008321:2922000:2925418292541829267731356Shewanella sp. MR-4, complete genomeMotA/TolQ/ExbB proton channel7e-0650.8
NC_012440:1874896:187489618748961875537642Persephonella marina EX-H1, complete genomeMotA/TolQ/ExbB proton channel family protein8e-0650.8
NC_008577:3125675:3129056312905631304111356Shewanella sp. ANA-3 chromosome 1, complete sequenceMotA/TolQ/ExbB proton channel9e-0650.4
NC_008322:2983951:2989242298924229905971356Shewanella sp. MR-7, complete genomeMotA/TolQ/ExbB proton channel9e-0650.4