Pre_GI: BLASTP Hits

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Query: NC_004129:5481629:5501712 Pseudomonas fluorescens Pf-5, complete genome

Start: 5501712, End: 5502320, Length: 609

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018080:4465618:448732744873274487932606Pseudomonas aeruginosa DK2 chromosome, complete genomeHolliday junction DNA helicase RuvA7e-92336
NC_011770:4763506:478611347861134786718606Pseudomonas aeruginosa LESB58, complete genomeHolliday junction DNA helicase RuvA7e-92336
NC_008463:4566976:459925745992574599862606Pseudomonas aeruginosa UCBPP-PA14, complete genomeHolliday junction DNA helicase RuvA7e-92336
NC_002516:1031386:105167310516731052278606Pseudomonas aeruginosa PAO1, complete genomeHolliday junction DNA helicase motor protein7e-92336
NC_013353:2134556:213455621345562135167612Escherichia coli O103:H2 str. 12009, complete genomecomponent of RuvABC resolvasome, regulatory subunit RuvA3e-56217
NC_011741:1978500:200927420092742009885612Escherichia coli IAI1 chromosome, complete genomeHolliday junction DNA helicase RuvA3e-56217
AP010958:2134556:213455621345562135167612Escherichia coli O103:H2 str. 12009 DNA, complete genomecomponent of RuvABC resolvasome, regulatory subunit RuvA3e-56217
CU928160:1978500:200927420092742009885612Escherichia coli IAI1 chromosome, complete genomecomponent of RuvABC resolvasome, regulatory subunit3e-56217
NC_007484:130896:151463151463152062600Nitrosococcus oceani ATCC 19707, complete genomeDNA recombination protein, RuvA1e-55216
NC_013361:2591829:262257126225712623182612Escherichia coli O26:H11 str. 11368 chromosome, complete genomeHolliday junction DNA helicase RuvA1e-55216
NC_013364:2355298:238604123860412386652612Escherichia coli O111:H- str. 11128, complete genomecomponent of RuvABC resolvasome, regulatory subunit RuvA1e-55216
NC_014315:114151:136216136216136824609Nitrosococcus watsoni C-113 chromosome, complete genomeHolliday junction DNA helicase RuvA3e-54211
NC_015222:386000:402999402999403580582Nitrosomonas sp. AL212 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvA7e-47186
NC_015731:402280:406978406978407562585Nitrosomonas sp. Is79A3 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvA8e-46183
NC_004757:230541:247313247313247900588Nitrosomonas europaea ATCC 19718, complete genomeprobable Holliday junction DNA helicase subunit2e-45182
NC_010577:1087092:110737911073791107963585Xylella fastidiosa M23, complete genomeHolliday junction DNA helicase RuvA5e-41167
NC_004556:1076063:109749210974921098076585Xylella fastidiosa Temecula1, complete genomeHolliday junction DNA helicase motor protein5e-41167
NC_010513:1128000:114686711468671147451585Xylella fastidiosa M12 chromosome, complete genomeHolliday junction DNA helicase RuvA1e-40166
NC_013939:1688400:169160616916061692181576Deferribacter desulfuricans SSM1, complete genomeHolliday junction DNA helicase RuvA2e-36152
NC_009454:1042592:105754010575401058175636Pelotomaculum thermopropionicum SI, complete genomeholliday junction resolvasome, DNA-binding subunit3e-36151
NC_007759:723675:747690747690748304615Syntrophus aciditrophicus SB, complete genomeholliday junction DNA helicase2e-35149
NC_009483:1636189:165271516527151653314600Geobacter uraniireducens Rf4 chromosome, complete genomeHolliday junction DNA helicase RuvA8e-33140
NC_014328:3682000:369543936954393696035597Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeHolliday junction DNA helicase2e-31135
NC_013385:1617338:161837816183781618959582Ammonifex degensii KC4, complete genomeHolliday junction DNA helicase RuvA2e-30132
NC_009615:3146376:315384531538453154435591Parabacteroides distasonis ATCC 8503 chromosome, complete genomeHolliday junction DNA helicase RuvA1e-29129
NC_014963:5034904:503844750384475039043597Terriglobus saanensis SP1PR4 chromosome, complete genomeHolliday junction DNA helicase RuvA5e-29127
NC_015160:136055:158042158042158623582Odoribacter splanchnicus DSM 20712 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvA9e-29126
NC_017243:1041917:104528410452841045862579Brachyspira intermedia PWS/A chromosome, complete genomeHolliday junction DNA helicase RuvA2e-27122
NC_012225:1071159:108784610878461088424579Brachyspira hyodysenteriae WA1, complete genomeHolliday junction DNA helicase RuvA2e-27122
NC_016052:2201211:220720822072082207801594Tetragenococcus halophilus NBRC 12172, complete genomeHolliday junction ATP-dependent DNA helicase RuvA5e-27120
NC_013410:3280039:328233232823323282940609Fibrobacter succinogenes subsp. succinogenes S85 chromosome,Holliday junction DNA helicase RuvA2e-26119
NC_015571:2002489:201002820100282010636609Porphyromonas gingivalis TDC60, complete genomeHolliday junction DNA helicase RuvA4e-26117
NC_013771:803042:807192807192807833642Cyanobacterium UCYN-A, complete genomeHolliday junction DNA helicase, RuvA subunit6e-25114
NC_016783:1374464:139056513905651391176612Corynebacterium diphtheriae INCA 402 chromosome, complete genomeholliday junction DNA helicase RuvA3e-25114
NC_016785:1321700:134786913478691348480612Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvA3e-25114
NC_016788:1349500:136496713649671365578612Corynebacterium diphtheriae HC04 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvA3e-25114
NC_016799:1343020:142170814217081422319612Corynebacterium diphtheriae 31A chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvA3e-25114
NC_016800:1378728:139484913948491395460612Corynebacterium diphtheriae BH8 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvA3e-25114
NC_016802:1317365:136717713671771367788612Corynebacterium diphtheriae HC02 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvA3e-25114
NC_015519:1205049:122677512267751227356582Tepidanaerobacter sp. Re1 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvA7e-25113
NC_015510:2487617:250956425095642510154591Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvA1e-24112
NC_019960:1126000:115244111524411153061621Prevotella dentalis DSM 3688 chromosome 1, complete sequenceHolliday junction DNA helicase, RuvA subunit2e-24112
NC_006085:1234587:125965812596581260263606Propionibacterium acnes KPA171202, complete genomeholliday junction DNA helicase RuvA2e-24112
NC_014935:711765:749550749550750113564Nitratifractor saLSUginis DSM 16511 chromosome, complete genomeholliday junction DNA helicase subunit ruva3e-24111
NC_016776:4115889:413668141366814137286606Bacteroides fragilis 638R, complete genomeputative holliday junction DNA helicase3e-24111
NC_014774:1210004:121107312110731211699627Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completeHolliday junction DNA helicase RuvA3e-24111
NC_016801:1361597:141138514113851411996612Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvA5e-24110
NC_016789:1334514:141206514120651412676612Corynebacterium diphtheriae PW8 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvA5e-24110
NC_015408:404778:426657426657427280624Chlamydophila pecorum E58 chromosome, complete genomeHolliday junction DNA helicase RuvA7e-24110
NC_016787:1350676:136146413614641362075612Corynebacterium diphtheriae HC03 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvA1e-23109
NC_016790:1319060:133753213375321338143612Corynebacterium diphtheriae VA01 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvA1e-23109
NC_011883:1478173:149710114971011497715615Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,Holliday junction DNA helicase RuvA3e-23108
NC_008783:145305:162493162493163146654Bartonella bacilliformis KC583, complete genomeHolliday junction DNA helicase RuvA3e-23108
NC_014039:1238500:126176712617671262372606Propionibacterium acnes SK137 chromosome, complete genomeHolliday junction DNA helicase RuvA2e-23108
NC_016512:1211653:123479112347911235396606Propionibacterium acnes TypeIA2 P.acn17 chromosome, completeHolliday junction DNA helicase RuvA2e-23108
NC_016516:1203000:122623712262371226842606Propionibacterium acnes TypeIA2 P.acn33 chromosome, completeHolliday junction DNA helicase RuvA2e-23108
NC_002935:1378566:139404413940441394655612Corynebacterium diphtheriae NCTC 13129, complete genomeHolliday junction DNA helicase motor protein2e-23108
NC_016782:1359000:136838713683871368998612Corynebacterium diphtheriae 241 chromosome, complete genomeholliday junction DNA helicase RuvA2e-23108
NC_016786:1359064:136835713683571368968612Corynebacterium diphtheriae HC01 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvA2e-23108
NC_015760:61345:637926379264382591Streptococcus salivarius CCHSS3, complete genomeholliday junction ATP-dependent DNA helicase ruvA6e-23107
NC_007516:1086948:109309910930991093743645Synechococcus sp. CC9605, complete genomeHolliday junction DNA helicase RuvA1e-22106
NC_015391:695350:709889709889710521633Carnobacterium sp. 17-4 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvA2e-22105
NC_006449:58436:608826088261472591Streptococcus thermophilus CNRZ1066, complete genomeHolliday junction DNA helicase motor protein2e-22105
NC_006448:59654:621006210062690591Streptococcus thermophilus LMG 18311, complete genomeHolliday junction DNA helicase motor protein2e-22105
NC_002677:563500:581787581787582398612Mycobacterium leprae TN, complete genomeHolliday junction DNA helicase motor protein6e-22103
NC_011896:563641:581796581796582407612Mycobacterium leprae Br4923, complete genomeHolliday junction DNA helicase component6e-22103
NC_015387:1344467:136048313604831361088606Marinithermus hydrothermalis DSM 14884 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvA5e-22103
NC_010981:1053533:105600210560021056574573Wolbachia pipientis, complete genomeHolliday junction DNA helicase RuvA5e-22103
NC_015732:1507473:151546815154681516166699Spirochaeta caldaria DSM 7334 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvA2e-21102
NC_013174:1459730:146731414673141467931618Jonesia denitrificans DSM 20603, complete genomeHolliday junction DNA helicase RuvA3e-21101
NC_006831:1112000:111332711133271113902576Ehrlichia ruminantium str. Gardel, complete genomeHolliday junction DNA helicase RUVA9e-21100
NC_009488:1430693:146007714600771460694618Orientia tsutsugamushi str. Boryong, complete genomeHolliday junction DNA helicase RuvA4e-21100
NC_014377:1335963:133963713396371340215579Thermosediminibacter oceani DSM 16646 chromosome, complete genomeHolliday junction DNA helicase RuvA4e-2098.2
NC_017372:902043:908910908910909461552Helicobacter pylori India7 chromosome, complete genomeHolliday junction DNA helicase RuvA3e-1891.7
NC_014256:636000:645017645017645568552Helicobacter pylori B8 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvA5e-1787.4
NC_009468:38112:438304383044450621Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequenceDNA recombination protein RuvA2e-1582.4
NC_006156:17637:220082200822598591Borrelia garinii PBi chromosome linear, complete sequenceHolliday junction DNA helicase9e-1373.6