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Query: NC_004129:5481629:5485950 Pseudomonas fluorescens Pf-5, complete genome

Start: 5485950, End: 5487047, Length: 1098

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010511:6756000:6771174677117467723341161Methylobacterium sp. 4-46 chromosome, complete genomebiotin carboxylase1e-71270
NC_011894:79282:8000380003811481146Methylobacterium nodulans ORS 2060, complete genomebiotin carboxylase1e-69263
NC_010552:58294:9731797317984711155Burkholderia ambifaria MC40-6 chromosome 2, complete sequencehypothetical protein2e-54213
NC_008391:2045348:2070272207027220714261155Burkholderia cepacia AMMD chromosome 2, complete sequencehypothetical protein3e-54212
NC_009668:1726000:1726646172664617277551110Ochrobactrum anthropi ATCC 49188 chromosome 2, complete sequencehypothetical protein5e-46185