Pre_GI: BLASTP Hits

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Query: NC_004129:5481629:5500653 Pseudomonas fluorescens Pf-5, complete genome

Start: 5500653, End: 5501711, Length: 1059

Host Lineage: Pseudomonas protegens Pf-5; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: This strain can suppress the diseases caused by Rhizoctonia solani and Pythium ultimum which affect cotton plants. The production of a number of antibiotics (pyrrolnitrin, pyoluteorin, and 2,4-diacetylphloroglucinol) as well as the production of siderophores (which may affect the ability of competing organisms to obtain environmental iron) by this strain can inhibit phytopathogen growth such as the above-mentioned fungi. The genome of this organism contains a number of genes, estimated at 5.7 % of the chromosome, that encode proteins that are involved in secondary metabolism. A large number of repeat elements (REP) are also found in the genome in greater numbers than in related Pseudomonas spp.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_018080:4465618:4486258448625844873161059Pseudomonas aeruginosa DK2 chromosome, complete genomeHolliday junction DNA helicase RuvB3e-169594
NC_002516:1031386:1052289105228910533471059Pseudomonas aeruginosa PAO1, complete genomeHolliday junction DNA helicase RuvB3e-169594
NC_008463:4566976:4598188459818845992461059Pseudomonas aeruginosa UCBPP-PA14, complete genomeHolliday junction DNA helicase RuvB3e-169594
NC_011770:4763506:4785044478504447861021059Pseudomonas aeruginosa LESB58, complete genomeHolliday junction DNA helicase RuvB3e-169594
NC_015731:402280:4075894075894086351047Nitrosomonas sp. Is79A3 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvB1e-140499
NC_015222:386000:4036034036034046491047Nitrosomonas sp. AL212 chromosome, complete genomeHolliday junction DNA helicase RuvB3e-138491
CU928160:1978500:2008255200825520092651011Escherichia coli IAI1 chromosome, complete genomeATP-dependent DNA helicase, component of RuvABC resolvasome3e-137488
NC_011741:1978500:2008255200825520092651011Escherichia coli IAI1 chromosome, complete genomeHolliday junction DNA helicase RuvB3e-137488
NC_013361:2591829:2621552262155226225621011Escherichia coli O26:H11 str. 11368 chromosome, complete genomeHolliday junction DNA helicase RuvB3e-137488
NC_013364:2355298:2385022238502223860321011Escherichia coli O111:H- str. 11128, complete genomeATP-dependent DNA helicase RuvB3e-137488
NC_014315:114151:1368211368211378671047Nitrosococcus watsoni C-113 chromosome, complete genomeHolliday junction DNA helicase RuvB8e-137486
NC_007484:130896:1520651520651531111047Nitrosococcus oceani ATCC 19707, complete genomeHolliday junction DNA helicase RuvB8e-137486
NC_007384:1355060:1355060135506013560701011Shigella sonnei Ss046, complete genomeHolliday junction helicase subunit A3e-136485
NC_004757:230541:2479192479192489591041Nitrosomonas europaea ATCC 19718, complete genomeHolliday junction DNA helicase RuvB5e-135480
NC_010513:1128000:1149471114947111505021032Xylella fastidiosa M12 chromosome, complete genomeHolliday junction DNA helicase RuvB1e-129462
NC_009483:1636189:1651634165163416526501017Geobacter uraniireducens Rf4 chromosome, complete genomeHolliday junction DNA helicase RuvB8e-126450
NC_010278:315941:316686316686317570885Actinobacillus pleuropneumoniae serovar 3 str. JL03 chromosome,Holliday junction DNA helicase RuvB1e-125449
NC_009053:313779:313779313779314663885Actinobacillus pleuropneumoniae L20, complete genomeholliday junction ATP-dependent DNA helicase RuvB1e-125449
NC_009454:1042592:1058294105829410593191026Pelotomaculum thermopropionicum SI, complete genomeHolliday junction DNA helicase RuvB3e-119428
NC_013939:1812259:1827873182787318289041032Deferribacter desulfuricans SSM1, complete genomeHolliday junction DNA helicase RuvB3e-117421
NC_007759:723675:7485817485817496031023Syntrophus aciditrophicus SB, complete genomeholliday junction DNA helicase3e-114412
NC_014377:1335963:1338607133860713396231017Thermosediminibacter oceani DSM 16646 chromosome, complete genomeHolliday junction DNA helicase subunit RuvB4e-112404
NC_011883:1478173:149611814961181497101984Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774,Holliday junction DNA helicase RuvB7e-112404
NC_015167:2068607:2092254209225420932761023Cellulophaga lytica DSM 7489 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvB1e-110399
NC_015519:1205049:122736912273691228367999Tepidanaerobacter sp. Re1 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvB1e-110399
NC_006448:1709523:1711466171146617124671002Streptococcus thermophilus LMG 18311, complete genomeHolliday junction DNA helicase RuvB6e-109394
NC_008783:145305:1613761613761624851110Bartonella bacilliformis KC583, complete genomeHolliday junction DNA helicase RuvB1e-108392
NC_008024:35948:5561555615566851071Streptococcus pyogenes MGAS10750, complete genomeHolliday junction DNA helicase ruvB4e-108391
NC_008532:1769733:176973317697331770689957Streptococcus thermophilus LMD-9, complete genomeHolliday junction resolvasome, helicase subunit4e-108391
NC_008022:35983:545835458355581999Streptococcus pyogenes MGAS10270, complete genomeHolliday junction DNA helicase ruvB4e-108391
NC_008021:35661:5413954139552091071Streptococcus pyogenes MGAS9429, complete genomeholliday junction DNA helicase6e-108390
NC_008023:35663:5411354113551831071Streptococcus pyogenes MGAS2096, complete genomeHolliday junction DNA helicase ruvB6e-108390
NC_007296:35661:5381953819548891071Streptococcus pyogenes MGAS6180, complete genomeHolliday junction DNA helicase RuvB5e-108390
NC_003485:35971:5443154431554951065Streptococcus pyogenes MGAS8232, complete genomeHolliday junction DNA helicase RuvB1e-107389
NC_014041:595464:6164086164086174301023Zunongwangia profunda SM-A87 chromosome, complete genomeHolliday junction DNA helicase B2e-107389
NC_014720:1737574:1755901175590117569171017Caldicellulosiruptor kronotskyensis 2002 chromosome, completeholliday junction DNA helicase ruvb2e-107389
NC_014328:3682000:3694379369437936954251047Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeHolliday junction DNA helicase2e-107389
NC_016052:2201211:2206167220616722071741008Tetragenococcus halophilus NBRC 12172, complete genomeHolliday junction ATP-dependent DNA helicase RuvB2e-107389
NC_013656:2505783:2527407252740725284081002Lactococcus lactis subsp. lactis KF147, complete genomeHolliday junction DNA helicase RuvB6e-107387
NC_006347:143876:1737681737681747961029Bacteroides fragilis YCH46, complete genomeHolliday junction DNA helicase RuvB9e-107387
NC_013192:305478:3318033318033328161014Leptotrichia buccalis DSM 1135, complete genomeHolliday junction DNA helicase RuvB4e-106385
NC_014774:1210004:1210004121000412110381035Candidatus Liberibacter solanacearum CLso-ZC1 chromosome, completeHolliday junction DNA helicase RuvB4e-106384
NC_015318:249445:252338252338253306969Hippea maritima DSM 10411 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvB5e-106384
NC_013385:1617338:1617338161733816183811044Ammonifex degensii KC4, complete genomeHolliday junction DNA helicase RuvB9e-106383
NC_015391:695350:7105567105567115691014Carnobacterium sp. 17-4 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB4e-105381
NC_016610:383000:3992763992764003071032Tannerella forsythia ATCC 43037 chromosome, complete genomeHolliday junction DNA helicase RuvB1e-104379
NC_019908:2247956:2265103226510322661371035Brachyspira pilosicoli P43/6/78 chromosome, complete genomeHolliday junction DNA helicase RuvB8e-103374
NC_002677:563500:5823955823955834441050Mycobacterium leprae TN, complete genomeHolliday junction DNA helicase RuvB3e-100365
NC_011896:563641:5824045824045834531050Mycobacterium leprae Br4923, complete genomeHolliday junction helicase component3e-100365
NC_009488:1430693:145910014591001460077978Orientia tsutsugamushi str. Boryong, complete genomeHolliday junction DNA helicase RuvB7e-100363
NC_016799:1343020:1420602142060214216901089Corynebacterium diphtheriae 31A chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB1e-98360
NC_016800:1378728:1393743139374313948311089Corynebacterium diphtheriae BH8 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB1e-98360
NC_016802:1317365:1366071136607113671591089Corynebacterium diphtheriae HC02 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB1e-98360
NC_016785:1321700:1346763134676313478511089Corynebacterium diphtheriae CDCE 8392 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB1e-98360
NC_002935:1378566:1392938139293813940261089Corynebacterium diphtheriae NCTC 13129, complete genomeHolliday junction DNA helicase RuvB9e-99360
NC_016782:1359000:1367281136728113683691089Corynebacterium diphtheriae 241 chromosome, complete genomeholliday junction DNA helicase RuvB9e-99360
NC_016786:1359064:1367251136725113683391089Corynebacterium diphtheriae HC01 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB9e-99360
NC_016787:1350676:1360358136035813614461089Corynebacterium diphtheriae HC03 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB9e-99360
NC_016788:1349500:1363861136386113649491089Corynebacterium diphtheriae HC04 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB9e-99360
NC_016790:1319060:1336426133642613375141089Corynebacterium diphtheriae VA01 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB9e-99360
NC_016789:1334514:1410959141095914120471089Corynebacterium diphtheriae PW8 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB8e-99360
NC_016801:1361597:1410279141027914113671089Corynebacterium diphtheriae C7 (beta) chromosome, complete genomeHolliday junction ATP-dependent DNA helicase RuvB8e-99360
NC_016783:1374464:1389459138945913905471089Corynebacterium diphtheriae INCA 402 chromosome, complete genomeholliday junction DNA helicase RuvB1e-98360
NC_010003:1444623:1462656146265614637111056Petrotoga mobilis SJ95, complete genomeHolliday junction DNA helicase RuvB2e-98358
NC_013410:3280039:3281250328125032822871038Fibrobacter succinogenes subsp. succinogenes S85 chromosome,Holliday junction DNA helicase RuvB6e-98357
NC_009468:38112:445074450745445939Acidiphilium cryptum JF-5 plasmid pACRY02, complete sequenceHolliday junction DNA helicase RuvB1e-96353
NC_009714:671897:6752696752696762911023Campylobacter hominis ATCC BAA-381, complete genomeHolliday junction DNA helicase RuvB3e-95348
NC_015732:1507473:1516186151618615173431158Spirochaeta caldaria DSM 7334 chromosome, complete genomeHolliday junction ATP-dependent DNA helicase ruvB5e-95348
NC_013174:1459730:1466263146626314673211059Jonesia denitrificans DSM 20603, complete genomeHolliday junction DNA helicase RuvB2e-93342
NC_005295:1146500:114656811465681147563996Ehrlichia ruminantium str. Welgevonden, complete genomeHolliday junction DNA helicase RuvB1e-92340
NC_006831:1112000:111505811150581116053996Ehrlichia ruminantium str. Gardel, complete genomeHolliday junction DNA helicase RuvB1e-92340
NC_006832:1125000:112516711251671126162996Ehrlichia ruminantium str. Welgevonden, complete genomeHolliday junction DNA helicase RuvB1e-92340
NC_005071:172364:1749461749461760041059Prochlorococcus marinus str. MIT 9313, complete genomeHolliday junction DNA helicase RuvB1e-92340
NC_008820:211616:2116162116162128121197Prochlorococcus marinus str. MIT 9303, complete genomeHolliday junction DNA helicase RuvB8e-93340
NC_014039:1238500:1262426126242612634481023Propionibacterium acnes SK137 chromosome, complete genomeHolliday junction DNA helicase RuvB1e-91336
NC_010981:1053533:105501610550161056005990Wolbachia pipientis, complete genomeHolliday junction DNA helicase RuvB7e-91334
NC_017080:166180:1829761829761840251050Phycisphaera mikurensis NBRC 102666, complete genomeHolliday junction ATP-dependent DNA helicase RuvB1e-89330
NC_006156:17637:2092020920219631044Borrelia garinii PBi chromosome linear, complete sequenceHolliday junction DNA helicase RuvB1e-89330
NC_015578:2428500:2443206244320624442851080Treponema primitia ZAS-2 chromosome, complete genomeholliday junction DNA helicase RuvB3e-88325
NC_015744:367142:3661843661843671881005Chlamydia trachomatis L2c chromosome, complete genomeholliday junction DNA helicase RuvB2e-88325
NC_010730:180000:185113185113186087975Sulfurihydrogenibium sp. YO3AOP1, complete genomeHolliday junction DNA helicase RuvB7e-88324
NC_010939:321492:321863321863322495633Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeholliday junction ATP-dependent DNA helicase RuvB6e-84311
NC_008817:1574506:1589665158966515907231059Prochlorococcus marinus str. MIT 9515, complete genomeHolliday junction DNA helicase RuvB3e-78292
NC_009091:1514770:1529915152991515309731059Prochlorococcus marinus str. MIT 9301, complete genomeHolliday junction DNA helicase RuvB2e-73276
NC_010939:321492:321492321492321905414Actinobacillus pleuropneumoniae serovar 7 str. AP76, completeholliday junction ATP-dependent DNA helicase RuvB6e-45181
NC_013960:1484824:1489599148959914914101812Nitrosococcus halophilus Nc4 chromosome, complete genomeAAA ATPase central domain protein1e-1274.3
NC_016629:3396500:3412795341279534140751281Desulfovibrio africanus str. Walvis Bay chromosome, completeAAA ATPase3e-1066.6
NC_011565:69427:7356973569748851317Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2,hypothetical protein1e-0964.7
NC_015510:1012195:1032257103225710335341278Haliscomenobacter hydrossis DSM 1100 chromosome, complete genomeAAA ATPase central domain-containing protein9e-1064.7
NC_019978:1816940:1835838183583818371481311Halobacteroides halobius DSM 5150, complete genomeAAA ATPase8e-0961.6
NC_014836:497350:4993134993135005751263Desulfurispirillum indicum S5 chromosome, complete genomeAAA ATPase central domain-containing protein8e-0961.6
NC_016002:1326500:1352971135297113542901320Pseudogulbenkiania sp. NH8B, complete genomeAAA ATPase central domain containing protein1e-0860.8
NC_002937:1764117:1764863176486317660981236Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, completeATPase, AAA family1e-0860.8
NC_019815:114288:1169181169181182731356Candidatus Kinetoplastibacterium crithidii (ex Angomonas deaneiATPase2e-0860.5
NC_015977:2565922:2570688257068825720131326Roseburia hominis A2-183 chromosome, complete genomerecombination factor protein RarA7e-0858.5
NC_008319:2172928:2195117219511721973182202Synechococcus sp. CC9311, complete genomeATPase9e-0858.2
NC_014328:1286407:1298694129869413000101317Clostridium ljungdahlii ATCC 49587 chromosome, complete genomeputative helicase subunit of Holliday junction resolvase2e-0757
NC_013165:2700978:2705543270554327068621320Slackia heliotrinireducens DSM 20476, complete genomeRecombination protein MgsA5e-0755.8
NC_007516:2090901:2110344211034421125092166Synechococcus sp. CC9605, complete genomeATPase8e-0755.1
NC_009074:2914053:2932477293247729337871311Burkholderia pseudomallei 668 chromosome I, complete sequenceATPase, AAA family1e-0654.3
NC_004663:1499145:1501726150172615029941269Bacteroides thetaiotaomicron VPI-5482, complete genomeputative ATPase, AAA family1e-0654.3
NC_015311:2281711:2282760228276022839801221Prevotella denticola F0289 chromosome, complete genomerecombination factor protein RarA1e-0654.3
NC_012785:205502:2265092265092277921284Kosmotoga olearia TBF 19.5.1, complete genomeAAA ATPase central domain protein1e-0654.3
NC_015634:2445396:2451654245165424529821329Bacillus coagulans 2-6 chromosome, complete genomeAAA ATPase central domain-containing protein1e-0654.3
NC_014622:724000:7265717265717278991329Paenibacillus polymyxa SC2 chromosome, complete genomeATPase AAA1e-0654.3
NC_019960:659756:6773676773676786771311Prevotella dentalis DSM 3688 chromosome 1, complete sequenceAAA ATPase2e-0653.9
NC_014554:1339566:1342528134252813438771350Lactobacillus plantarum subsp. plantarum ST-III chromosome,replication-associated recombination protein A2e-0653.9
NC_010655:2000025:2020324202032420217151392Akkermansia muciniphila ATCC BAA-835, complete genomeAAA ATPase central domain protein2e-0653.9
NC_005956:1139342:1139342113934211406611320Bartonella henselae str. Houston-1, complete genomeATPase, aaa family2e-0653.9
NC_010505:1581429:1597413159741315987561344Methylobacterium radiotolerans JCM 2831, complete genomeAAA ATPase central domain protein2e-0653.9
NC_015519:1205049:1212339121233912136761338Tepidanaerobacter sp. Re1 chromosome, complete genomeAAA ATPase central domain-containing protein2e-0653.5
NC_002946:684728:6886516886516899611311Neisseria gonorrhoeae FA 1090, complete genomehypothetical protein3e-0653.1
NC_011035:968569:9832579832579845671311Neisseria gonorrhoeae NCCP11945 chromosome, complete genomerecombination factor protein RarA3e-0653.1
NC_017511:884083:8993468993469006561311Neisseria gonorrhoeae TCDC-NG08107 chromosome, complete genomerecombination factor protein RarA3e-0653.1
NC_011830:3786173:3805862380586238071751314Desulfitobacterium hafniense DCB-2, complete genomeAAA ATPase central domain protein4e-0652.8
NC_002935:1315019:1365030136503013664001371Corynebacterium diphtheriae NCTC 13129, complete genomeConserved hypothetical protein (putative ATP/GTP binding protein)4e-0652.8
NC_016802:1317365:1339621133962113409791359Corynebacterium diphtheriae HC02 chromosome, complete genomerecombination factor protein RarA4e-0652.8
NC_016790:1259356:1305522130552213068801359Corynebacterium diphtheriae VA01 chromosome, complete genomerecombination factor protein RarA4e-0652.8
NC_002947:4484824:4510462451046245117871326Pseudomonas putida KT2440, complete genomeATPase, AAA family5e-0652.4
NC_011094:1050700:1050700105070010520431344Salmonella enterica subsp. enterica serovar Schwarzengrund strrecombination factor protein RarA5e-0652.4
NC_016789:1334514:1384530138453013858881359Corynebacterium diphtheriae PW8 chromosome, complete genomerecombination factor protein RarA7e-0652
NC_016799:1343020:1394174139417413955321359Corynebacterium diphtheriae 31A chromosome, complete genomerecombination factor protein RarA7e-0652
NC_016801:1361597:1383850138385013852081359Corynebacterium diphtheriae C7 (beta) chromosome, complete genomerecombination factor protein RarA7e-0652
NC_016782:1316467:1338722133872213400801359Corynebacterium diphtheriae 241 chromosome, complete genomerecombination factor protein RarA7e-0652
NC_016786:1316436:1338692133869213400501359Corynebacterium diphtheriae HC01 chromosome, complete genomerecombination factor protein RarA7e-0652
NC_009614:4802000:4821014482101448222911278Bacteroides vulgatus ATCC 8482 chromosome, complete genomerecombination factor protein RarA6e-0652
NC_020300:960692:9626369626369639731338Bartonella australis Aust/NH1, complete genomerecombination factor protein RarA9e-0651.6