Pre_GI: BLASTN Hits

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Query: NC_017179:1683199 Clostridium difficile BI1, complete genome

Start: 1683199, End: 1708503, Length: 25305

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009089:10938321093832111768023849Clostridium difficile 630, complete genome07140BLASTN svgBLASTP svg
NC_012563:2680246*2680246272077540530Clostridium botulinum A2 str. Kyoto, complete genome1e-64256BLASTN svgBLASTP svg
NC_004557:11415581141558115965918102Clostridium tetani E88, complete genome9e-22113BLASTN svgBLASTP svg
NC_014393:93700093700097266735668Clostridium cellulovorans 743B chromosome, complete genome1e-1799.6BLASTN svgBLASTP svg
NC_015913:11796611796615176933804Candidatus Arthromitus sp. SFB-mouse-Japan, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_021182:554000*55400058588731888Clostridium pasteurianum BC1, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_010079:15643271564327160887644550Staphylococcus aureus subsp. aureus USA300_TCH1516, complete8e-1073.8BLASTN svgBLASTP svg
NC_007793:15744561574456159486920414Staphylococcus aureus subsp. aureus USA300, complete genome8e-1073.8BLASTN svgBLASTP svg
NC_013517:15012761501276152124519970Sebaldella termitidis ATCC 33386, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_018704:14247281424728144309918372Amphibacillus xylanus NBRC 15112, complete genome3e-0661.9BLASTN svgBLASTP svg