Pre_GI: BLASTP Hits

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Query: NC_017179:905347:912586 Clostridium difficile BI1, complete genome

Start: 912586, End: 913926, Length: 1341

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: Clostridium difficile BI1 is a human strain isolated in the United States in 1988. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. C. difficile infection represents one of the most common nosocomial (originating in a hospital) infections. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Cytotoxin B depolymerizes actin, the major protein of the cytoskeleton, and thus aids in destruction of tissues. The combined action of the toxins results in necrosis of superficial epithelium and edema (fluidic swelling) in affected areas of intestine. Proliferation of C. difficile is normally prevented by normal intestinal microflora, which is believed to inhibit attachment of the bacterium and its toxins to intestinal walls. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013315:895500:9028099028099041491341Clostridium difficile CD196 chromosome, complete genomepermease0784
NC_013316:891782:9004249004249017641341Clostridium difficile R20291, complete genomeputative permease0784
NC_009089:965959:9731989731989745381341Clostridium difficile 630, complete genomeprobable permease0784
NC_020210:2044944:2061065206106520623751311Geobacillus sp. GHH01, complete genomeputative permease1e-68260
NC_016041:2420098:2420098242009824213931296Glaciecola nitratireducens FR1064 chromosome, complete genomeGntP family permease2e-56220
NC_009342:135500:1368681368681381871320Corynebacterium glutamicum R chromosome, complete genomehypothetical protein1e-49197
NC_004193:2692136:2697509269750926987921284Oceanobacillus iheyensis HTE831, complete genomehypothetical protein4e-45182
NC_017243:3141500:3160479316047931618671389Brachyspira intermedia PWS/A chromosome, complete genomepropionate permease2e-41170
NC_009617:2355662:2372518237251823739121395Clostridium beijerinckii NCIMB 8052 chromosome, complete genomecitrate transporter2e-39163
NC_014632:312000:3166003166003179731374Ilyobacter polytropus DSM 2926 chromosome, complete genomecitrate transporter7e-37155
NC_020291:2291418:2297737229773722991311395Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genomeH+/gluconate symporter family protein1e-36154
NC_021150:1322000:1350925135092513523161392Azotobacter vinelandii CA6, complete genomeintegral membrane permease/GntP family/citrate transporter4e-36152
NC_012560:1322000:1350913135091313523041392Azotobacter vinelandii DJ, complete genomeintegral membrane permease/GntP family/citrate transporter4e-36152
NC_015737:1441086:1450249145024914516461398Clostridium sp. SY8519, complete genomehypothetical protein1e-34147
NC_015563:3571682:3571682357168235730911410Delftia sp. Cs1-4 chromosome, complete genomeCitrate transporter1e-31138
NC_005957:2756000:2777601277760127790371437Bacillus thuringiensis serovar konkukian str. 97-27, completeprobable integral membrane protein; possible gluconate transporter1e-31137
NC_014313:3617910:3620205362020536216021398Hyphomicrobium denitrificans ATCC 51888 chromosome, completeCitrate transporter1e-31137
NC_021172:3786725:3787742378774237891391398Hyphomicrobium denitrificans 1NES1, complete genomecitrate transporter2e-30134
NC_012731:2974745:2974745297474529761361392Klebsiella pneumoniae NTUH-K2044 chromosome, complete genomecitrate transporter1e-30134
NC_011283:2323687:2342462234246223438531392Klebsiella pneumoniae 342 chromosome, complete genomecitrate transporter family protein1e-30134
NC_012470:580373:6046596046596059901332Streptococcus equi subsp. zooepidemicus, complete genomepermease4e-28126
NC_013757:3613438:3619111361911136206761566Geodermatophilus obscurus DSM 43160, complete genomeCitrate transporter4e-24112
NC_015565:824448:8346778346778359481272Desulfotomaculum carboxydivorans CO-1-SRB chromosome, completeCitrate transporter9e-0755.1
NC_010723:2231834:2244517224451722457731257Clostridium botulinum E3 str. Alaska E43, complete genomeGntP family permease8e-0652.4