Pre_GI: BLASTN Hits

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Query: NC_017062:685321 Rickettsia typhi str. B9991CWPP chromosome, complete genome

Start: 685321, End: 705720, Length: 20400

Host Lineage: Rickettsia typhi; Rickettsia; Rickettsiaceae; Rickettsiales; Proteobacteria; Bacteria

General Information: This genus, like other Rickettsial organisms such as Neorickettsia and Anaplasma, is composed of obligate intracellular pathogens. The latter is composed of two organisms, Rickettsia prowazekii and Rickettsia typhi. The bacteria are transmitted via an insect, usually a tick, to a host organism, in this case humans, where they target endothelial cells and sometimes macrophages. They attach via an adhesin, rickettsial outer membrane protein A, and are internalized where they persist as cytoplasmically free organisms. Transovarial transmission (from mother to offspring) occurs in the invertebrate host. This organism causes murine typhus and is an obligate intracellular pathogen that infects both the flea vector and hosts such as human, rat, and mouse. R. prowazekii, and genomic comparisons demonstrate colinearity and similarity to the genome of that organism except for two independent inversions near the origin and terminus. In the flea vector, the bacterium penetrates the gut epithelial barrier and is found in the feces which become infective.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_006142:683000*68300070514022141Rickettsia typhi str. Wilmington, complete genome011080BLASTN svgBLASTP svg
NC_000963:676000*67600069811822119Rickettsia prowazekii str. Madrid E, complete genome07967BLASTN svgBLASTP svg
NC_015866:767790*76779079562627837Rickettsia heilongjiangensis 054 chromosome, complete genome04827BLASTN svgBLASTP svg
NC_016050:771752*77175279719725446Rickettsia japonica YH, complete genome04764BLASTN svgBLASTP svg
NC_012730:131445*13144515343621992Rickettsia peacockii str. Rustic, complete genome02763BLASTN svgBLASTP svg
NC_010263:771901*77190179080218902Rickettsia rickettsii str. Iowa, complete genome02684BLASTN svgBLASTP svg
NC_009881:724269*72426974466620398Rickettsia akari str. Hartford, complete genome02518BLASTN svgBLASTP svg
NC_009879:475500*47550049498919490Rickettsia canadensis str. McKiel, complete genome02442BLASTN svgBLASTP svg
NC_009883:64149164149166009918609Rickettsia bellii OSU 85-389, complete genome0930BLASTN svgBLASTP svg
NC_007940:669143*66914368959920457Rickettsia bellii RML369-C, complete genome0922BLASTN svgBLASTP svg
NC_009883:11975001197500121859921100Rickettsia bellii OSU 85-389, complete genome4e-42180BLASTN svgBLASTP svg
NC_007940:32294832294834166218715Rickettsia bellii RML369-C, complete genome4e-42180BLASTN svgBLASTP svg
NC_011567:204772*20477222623221461Anoxybacillus flavithermus WK1, complete genome1e-20109BLASTN svgBLASTP svg
NC_011567:388358*38835841678028423Anoxybacillus flavithermus WK1, complete genome1e-20109BLASTN svgBLASTP svg
NC_014551:157418*15741818251925102Bacillus amyloliquefaciens DSM 7, complete genome1e-20109BLASTN svgBLASTP svg
NC_014976:1174430*1174430119919524766Bacillus subtilis BSn5 chromosome, complete genome1e-20109BLASTN svgBLASTP svg
NC_016047:261304*26130428350222199Bacillus subtilis subsp. spizizenii TU-B-10 chromosome, complete1e-20109BLASTN svgBLASTP svg
NC_018704:81733*8173311606034328Amphibacillus xylanus NBRC 15112, complete genome3e-18101BLASTN svgBLASTP svg
NC_010571:4483500*4483500451059927100Opitutus terrae PB90-1, complete genome4e-1797.6BLASTN svgBLASTP svg
NC_004193:375416*375416683449308034Oceanobacillus iheyensis HTE831, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_004193:79588*7958811154731960Oceanobacillus iheyensis HTE831, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_013510:170199*17019920517334975Thermomonospora curvata DSM 43183, complete genome4e-1487.7BLASTN svgBLASTP svg
NC_004668:241352*24135226701725666Enterococcus faecalis V583, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_004668:3156247*3156247318179425548Enterococcus faecalis V583, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_006831:77273777273779560022864Ehrlichia ruminantium str. Gardel, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_006832:77628677628679962623341Ehrlichia ruminantium str. Welgevonden, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_014168:709036*70903673493125896Segniliparus rotundus DSM 44985 chromosome, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_005295:79643779643781969823262Ehrlichia ruminantium str. Welgevonden, complete genome7e-1383.8BLASTN svgBLASTP svg
NC_012793:2122036*2122036214675524720Geobacillus sp. WCH70, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_012121:139741*13974118060640866Staphylococcus carnosus subsp. carnosus TM300, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_013192:1886337*1886337191224425908Leptotrichia buccalis DSM 1135, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_014014:713506*71350673497421469Mycoplasma crocodyli MP145 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_014830:335380*33538037339338014Intrasporangium calvum DSM 43043 chromosome, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_012121:1444633*1444633146884124209Staphylococcus carnosus subsp. carnosus TM300, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_010655:2065567*2065567208899123425Akkermansia muciniphila ATCC BAA-835, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_006448:121435*12143514257121137Streptococcus thermophilus LMG 18311, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006448:5046*50463135826313Streptococcus thermophilus LMG 18311, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006449:121462*12146214259721136Streptococcus thermophilus CNRZ1066, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_006449:5046*50463138626341Streptococcus thermophilus CNRZ1066, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015760:123929*12392914613122203Streptococcus salivarius CCHSS3, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_015760:8914*89142721018297Streptococcus salivarius CCHSS3, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_007643:3799425*3799425383775538331Rhodospirillum rubrum ATCC 11170, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_009089:1*13459934599Clostridium difficile 630, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013316:1*14895548955Clostridium difficile R20291, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_013921:36000*360005820522206Thermoanaerobacter italicus Ab9 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014391:6848475*6848475686836219888Micromonospora aurantiaca ATCC 27029 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_014815:6779538*6779538680255323016Micromonospora sp. L5 chromosome, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_008262:1835613*1835613185504319431Clostridium perfringens SM101, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_007799:55590055590058009124192Ehrlichia chaffeensis str. Arkansas, complete genome9e-0660BLASTN svgBLASTP svg
NC_011126:555483*55548359228736805Hydrogenobaculum sp. Y04AAS1, complete genome9e-0660BLASTN svgBLASTP svg
NC_013131:621366*62136664479723432Catenulispora acidiphila DSM 44928, complete genome9e-0660BLASTN svgBLASTP svg
NC_015557:558127*55812757785119725Hydrogenobaculum sp. 3684 chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_015587:558180*55818057790619727Hydrogenobaculum sp. SHO chromosome, complete genome9e-0660BLASTN svgBLASTP svg
NC_020411:558153*55815357787919727Hydrogenobaculum sp. HO, complete genome9e-0660BLASTN svgBLASTP svg
NC_000908:160072*16007221039050319Mycoplasma genitalium G37, complete genome9e-0660BLASTN svgBLASTP svg