Pre_GI: BLASTP Hits

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Query: NC_016822:1304398:1309869 Shigella sonnei 53G, complete genome

Start: 1309869, End: 1310264, Length: 396

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_007384:1320287:132702513270251327450426Shigella sonnei Ss046, complete genomehypothetical protein4e-64242
NC_011415:2153243:216815121681512168546396Escherichia coli SE11 chromosome, complete genomehypothetical protein7e-64242
NC_008258:1934479:195153919515391951934396Shigella flexneri 5 str. 8401, complete genomehypothetical protein7e-64242
NC_010634:2297000:231603523160352316430396Yersinia pseudotuberculosis PB1/+, complete genomehypothetical protein4e-47186
NC_008150:1593500:161348516134851613880396Yersinia pestis Antiqua, complete genomehypothetical protein4e-47186
NC_004547:2810151:282743628274362827831396Erwinia carotovora subsp. atroseptica SCRI1043, complete genomehypothetical protein2e-46183
NC_009348:1893292:191701919170191917414396Aeromonas salmonicida subsp. salmonicida A449, complete genomehypothetical protein1e-1168.2
NC_013194:2788299:280071528007152801113399Candidatus Accumulibacter phosphatis clade IIA str. UW-1, completemembrane-associated protein in eicosanoid and glutathione metabolism (MAPEG)3e-0960.5
NC_017030:2728175:274027327402732740683411Corallococcus coralloides DSM 2259 chromosome, complete genomeinner membrane protein yecN6e-0959.7