Pre_GI: BLASTP Hits

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Query: NC_015957:527777:538567 Streptomyces violaceusniger Tu 4113 chromosome, complete genome

Start: 538567, End: 539109, Length: 543

Host Lineage: Streptomyces violaceusniger; Streptomyces; Streptomycetaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Environment: Soil, Terrestrial; Temp: Mesophile. Streptomyces violaceusniger 16S rRNA gene clade form a gray aerial spore mass and a grayish-yellow substrate mycelium on oatmeal agar, and produce aerial hyphae that differentiate into spiral chains of rugose ornamented spores. The characteristic earthy smell of freshly plowed soil is actually attributed to the aromatic terpenoid geosmin produced by species of Streptomyces. There are currently 364 known species of this genus, many of which are the most important industrial producers of antibiotics and other secondary metabolites of antibacterial, antifungal, antiviral, and antitumor nature, as well as immunosuppressants, antihypercholesterolemics, etc. Streptomycetes are crucial in the soil environment because their diverse metabolism allows them to degrade the insoluble remains of other organisms, including recalcitrant compounds such as lignocelluloses and chitin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_015434:3581001:359056835905683591095528Verrucosispora maris AB-18-032 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily protein1e-31135
NC_015434:4640769:466706546670654667562498Verrucosispora maris AB-18-032 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily protein3e-29127
NC_014666:4547873:455305045530504553733684Frankia sp. EuI1c chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-27120
NC_014666:4547873:455674645567464557366621Frankia sp. EuI1c chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-26118
NC_013595:3952196:396014139601413960653513Streptosporangium roseum DSM 43021, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-26116
NC_015953:3782302:380522238052223805776555Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-25115
NC_013131:7530000:754581375458137546373561Catenulispora acidiphila DSM 44928, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-25115
NC_017955:3670670:368276836827683683406639Modestobacter marinus, complete genomeRNA polymerase sigma-E factor5e-25113
NC_021177:4124839:414665741466574147223567Streptomyces fulvissimus DSM 40593, complete genomeRNA polymerase ECF-subfamily sigma factor2e-24112
NC_014830:4012999:100361003610545510Intrasporangium calvum DSM 43043 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-24110
NC_013929:1119384:113906711390671139573507Streptomyces scabiei 87.22 chromosome, complete genomesigma factor2e-23108
NC_009664:4347718:437238843723884373200813Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-23108
NC_014318:1537732:154374515437451544242498Amycolatopsis mediterranei U32 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor4e-23107
NC_015671:1865752:188091018809101881560651Cellvibrio gilvus ATCC 13127 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit9e-22102
NC_013947:3406000:341769134176913418221531Stackebrandtia nassauensis DSM 44728 chromosome, complete genomeRNA polymerase sigma-24 subunit, ECF subfamily2e-2099
NC_017093:3777178:379561837956183796130513Actinoplanes missouriensis 431, complete genomeputative RNA polymerase ECF-subfamily sigma factor3e-2097.8
NC_016582:5769080:579130957913095791824516Streptomyces bingchenggensis BCW-1 chromosome, complete genomeputative sigma factor5e-2097.1
NC_013729:6217500:621908162190816219575495Kribbella flavida DSM 17836, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily7e-2096.7
NC_009664:4423829:462452046245204625191672Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-1995.9
NC_009664:4423829:467450146745014674992492Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1995.5
NC_016582:5769080:578069657806965781226531Streptomyces bingchenggensis BCW-1 chromosome, complete genomeECF subfamily RNA polymerase sigma factor5e-1890.5
NC_015953:3159234:316146431614643162048585Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-1788.6
NC_019673:3253650:325714232571423257648507Saccharothrix espanaensis DSM 44229 complete genomehypothetical protein6e-1683.6
NC_016109:2938000:295136229513622951883522Kitasatospora setae KM-6054, complete genomeputative RNA polymerase ECF subfamily sigma factor9e-1683.2
NC_009664:4696961:473045147304514731020570Kineococcus radiotolerans SRS30216, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-1579.7
NC_013510:5175649:517647651764765177051576Thermomonospora curvata DSM 43183, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-1476.6
NC_014391:2875553:288034328803432880780438Micromonospora aurantiaca ATCC 27029 chromosome, complete genomesigma-70 family RNA polymerase2e-1375.5
NC_010572:3925803:395301139530113953586576Streptomyces griseus subsp. griseus NBRC 13350, complete genomeputative RNA polymerase ECF-subfamily sigma factor5e-1373.9
NC_013131:10413240:104313391043133910431857519Catenulispora acidiphila DSM 44928, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily6e-1270.5
NC_016111:3052494:309113230911323091815684Streptomyces cattleya NRRL 8057, complete genomeRNA polymerase ECF-subfamily sigma factor2e-1168.6
NC_008786:1936626:194198719419871942556570Verminephrobacter eiseniae EF01-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-1065.1
NC_014815:658893:678552678552679058507Micromonospora sp. L5 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ecf subfamily2e-1065.1
NC_012811:959725:963246963246963947702Methylobacterium extorquens AM1 megaplasmid, complete sequenceRNA polymerase ECF-type sigma factor3e-1064.7
NC_004557:691944:708021708021708554534Clostridium tetani E88, complete genomeRNA polymerase sigma factor sigV3e-0961.2
NC_014153:2282725:230016223001622300779618Thiomonas intermedia K12 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0960.8
NC_013131:10322152:103279401032794010328452513Catenulispora acidiphila DSM 44928, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0859.3
NC_016109:4088259:408825940882594088831573Kitasatospora setae KM-6054, complete genomeputative RNA polymerase ECF subfamily sigma factor1e-0858.9
NC_021184:3174500:320020332002033200760558Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family4e-0857.8
NC_011758:369704:379094379094379606513Methylobacterium chloromethanicum CM4 plasmid pMCHL01, completeRNA polymerase, sigma-24 subunit, ECF subfamily9e-0856.6
NC_021184:1024305:103925110392511039850600Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family1e-0756.2
NC_008536:5192235:520608052060805206640561Solibacter usitatus Ellin6076, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0756.2
NC_014923:79370:919919199192533543Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, completeRNA polymerase sigma factor, sigma-70 family1e-0755.8
NC_011894:2811573:282499228249922825498507Methylobacterium nodulans ORS 2060, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily2e-0755.5
NC_014833:3268102:327741332774133277916504Ruminococcus albus 7 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-0755.1
NC_017955:3731480:373402137340213734263243Modestobacter marinus, complete genomeRNA polymerase sigma-E factor2e-0755.1
NC_020300:1344453:136080613608061361360555Bartonella australis Aust/NH1, complete genomeRNA polymerase sigma factor3e-0754.7
NC_009720:251703:267010267010267516507Xanthobacter autotrophicus Py2, complete genomeECF subfamily RNA polymerase sigma-24 factor5e-0754.3
NC_009720:2945655:295479629547962955302507Xanthobacter autotrophicus Py2, complete genomeECF subfamily RNA polymerase sigma-24 factor5e-0754.3
NC_015144:1576047:158985115898511590342492Weeksella virosa DSM 16922 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0754.3
NC_011992:1318691:131869113186911319206516Acidovorax ebreus TPSY, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily4e-0754.3
NC_015589:1899329:190623419062341906758525Desulfotomaculum ruminis DSM 2154 chromosome, complete genomesigma-70 family RNA polymerase sigma factor6e-0753.9
NC_007677:241846:245884245884246468585Salinibacter ruber DSM 13855, complete genomepossible sigma-70 factor, ECF subfamily, putative8e-0753.5
NC_016641:1530905:153090515309051531426522Paenibacillus terrae HPL-003 chromosome, complete genomeECF subfamily RNA polymerase sigma-24 factor1e-0653.1
NC_013929:5135285:515159451515945152304711Streptomyces scabiei 87.22 chromosome, complete genomesigma factor1e-0653.1
NC_011567:139598:151917151917152480564Anoxybacillus flavithermus WK1, complete genomeDNA-directed RNA polymerase specialized sigma subunit1e-0653.1
NC_008319:1376938:137642913764291376980552Synechococcus sp. CC9311, complete genomeRNA polymerase sigma-70 factor family protein1e-0653.1
NC_011894:4911500:492350949235094924204696Methylobacterium nodulans ORS 2060, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily9e-0753.1
NC_007333:3626510:363293636329363633556621Thermobifida fusca YX, complete genomeRNA polymerase sigma-70 factor8e-0753.1
NC_021184:3149000:315104331510433151618576Desulfotomaculum gibsoniae DSM 7213, complete genomeRNA polymerase sigma factor, sigma-70 family1e-0652.8
NC_003155:5253923:527524952752495275962714Streptomyces avermitilis MA-4680, complete genomeRNA polymerase sigma-70 factor1e-0652.8
NC_014032:269844:274798274798275382585Salinibacter ruber M8 chromosome, complete genomeRNA polymerase sigma factor1e-0652.8
NC_016627:2524307:254776425477642548498735Clostridium clariflavum DSM 19732 chromosome, complete genomesigma-70 family RNA polymerase sigma factor2e-0652.4
NC_012880:3982383:400842040084204008974555Dickeya dadantii Ech703, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0652.4
NC_015953:4908069:492497149249714925813843Streptomyces sp. SirexAA-E chromosome, complete genomeECF subfamily RNA polymerase sigma-24 subunit2e-0652
NC_009925:1184442:118898911889891189603615Acaryochloris marina MBIC11017, complete genomeRNA polymerase sigma-24 subunit2e-0652
NC_012846:1888000:190443319044331904987555Bartonella grahamii as4aup, complete genomeRNA polymerase sigma factor2e-0652
NC_020272:3706722:372792437279243728487564Bacillus amyloliquefaciens IT-45, complete genomeRNA polymerase sigma factor SigW2e-0652
NC_020410:198000:198744198744199307564Bacillus amyloliquefaciens subsp. plantarum UCMB5036 completeRNA polymerase ECF(Extracytoplasmic function)-type sigma factor W2e-0652
NC_014551:199500:199660199660200223564Bacillus amyloliquefaciens DSM 7, complete genomeRNA polymerase ECF(extracytoplasmic function)-type sigma factor W2e-0652
NC_017188:177500:177639177639178202564Bacillus amyloliquefaciens TA208 chromosome, complete genomeRNA polymerase sigma factor SigW2e-0652
NC_017190:182449:182449182449183012564Bacillus amyloliquefaciens LL3 chromosome, complete genomeRNA polymerase sigma factor2e-0652
NC_017191:183500:183549183549184112564Bacillus amyloliquefaciens XH7 chromosome, complete genomeRNA polymerase sigma factor SigW2e-0652
NC_014932:1232346:130281113028111303365555Bartonella clarridgeiae 73, complete genomeRNA polymerase sigma factor, ecr subfamily2e-0652
NC_014829:1376253:138816813881681388734567Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily3e-0651.6
NC_018750:3964784:398322139832213983961741Streptomyces venezuelae ATCC 10712, complete genomeRNA polymerase sigma-70 factor3e-0651.6
NC_019897:329945:346389346389346979591Thermobacillus composti KWC4 chromosome, complete genomesigma-70 family RNA polymerase sigma factor5e-0650.8
NC_014829:178000:186205186205186768564Bacillus cellulosilyticus DSM 2522 chromosome, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily5e-0650.8
NC_014391:4672105:469394046939404694545606Micromonospora aurantiaca ATCC 27029 chromosome, complete genomesigma-70 family RNA polymerase6e-0650.4
NC_003888:4251867:428257742825774283287711Streptomyces coelicolor A3(2), complete genomeRNA polymerase sigma-70 factor6e-0650.4
NC_014910:2015627:201649420164942017018525Alicycliphilus denitrificans BC chromosome, complete genomeRNA polymerase sigma factor, sigma-70 family8e-0650.1
NC_011757:1067543:107244910724491073129681Methylobacterium chloromethanicum CM4, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily8e-0650.1
NC_012811:139498:143577143577144257681Methylobacterium extorquens AM1 megaplasmid, complete sequenceRNA polymerase, sigma-24 subunit, ECF subfamily8e-0650.1
NC_006322:567987:592712592712593209498Bacillus licheniformis ATCC 14580, complete genomeSigV8e-0650.1
NC_006270:568171:592922592922593419498Bacillus licheniformis ATCC 14580, complete genomeRNA polymerase ECF(extracytoplasmic function)-type sigma factor (sigma-V)8e-0650.1
NC_011830:1190502:120506412050641205564501Desulfitobacterium hafniense DCB-2, complete genomeRNA polymerase, sigma-24 subunit, ECF subfamily1e-0549.7