Pre_GI: BLASTP Hits

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Query: NC_011205:609464:634928 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853

Start: 634928, End: 635254, Length: 327

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a bovine-adapted serovar that is genetically related to S. Enteritidis that lives in the bovine intestinal tract and can causes disease in humans. While rare in incidence, S. dublin infection classically produces a syndrome of sustained bacteremia with fever, resulting in high morbidity and mortality. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011147:2496808:250447425044742504800327Salmonella enterica subsp. enterica serovar Paratyphi A strholin1e-56218
NC_006511:2501500:250893825089382509264327Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCClysis (holin)1e-56218
NC_010067:2529750:258053225805322580855324Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein7e-56215
NC_012947:3015985:301690330169033017226324Escherichia coli 'BL21-Gold(DE3)pLysS AG' chromosome, completephage holin, lambda family3e-49193
NC_017328:303987:325292325292325615324Shigella flexneri 2002017 chromosome, complete genomeS protein3e-49193
NC_009800:289000:309172309172309495324Escherichia coli HS, complete genomephage holin, lambda family3e-49193
NC_006905:368942:391363391363391686324Salmonella enterica subsp. enterica serovar Choleraesuis strholin-like protein3e-49193
NC_012125:1330066:135264413526441352961318Salmonella enterica subsp. enterica serovar Paratyphi C strainholin-like protein1e-48191
NC_011283:2836000:289803028980302898353324Klebsiella pneumoniae 342 chromosome, complete genomephage holin, lambda family3e-43173
NC_013892:3803278:382638538263853826711327Xenorhabdus bovienii SS-2004 chromosome, complete genomeHolin (Lysis protein 13)4e-26116
NC_012214:1974500:198806919880691988404336Erwinia pyrifoliae Ep1/96, complete genomeSimilar to phage lysis protein S4e-1166.6
NC_016816:2953530:296228429622842962655372Pantoea ananatis LMG 5342, complete genomephage holin, lambda family1e-0652
NC_011770:1431740:145172214517221452111390Pseudomonas aeruginosa LESB58, complete genomehypothetical protein3e-0650.4
NC_011294:1220526:123559112355911235935345Salmonella enterica subsp. enterica serovar Enteritidis strbacteriophage holin4e-0650.1
NC_016831:1734292:174181317418131742148336Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative bacteriophage holin5e-0650.1
NC_011205:1345511:137147013714701371805336Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853phage holin, lambda family5e-0650.1
NC_011770:860944:881354881354881686333Pseudomonas aeruginosa LESB58, complete genomeHolin, phage lambda7e-0649.3