Pre_GI: BLASTP Hits

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Query: NC_011094:1127983:1134227 Salmonella enterica subsp. enterica serovar Schwarzengrund str

Start: 1134227, End: 1134316, Length: 90

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This serovar is the predominant cause of Salmonellosis in Southeast Asia, a major source of imported food products to the USA. It was also the cause of the first recognized outbreak of fluoroquinolone-resistant salmonellosis in the USA. Recent reports suggest that high-level fluoroquinolone resistance is emerging in S. Schwarzengrund in different parts of the world. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011353:1195179:12157781215778121586790Escherichia coli O157:H7 str. EC4115 chromosome, complete genometRNA-Ser1e-0858.5
NC_011205:1147556:11538001153800115388990Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853tRNA-Ser1e-0858.5
NC_011149:1035990:10448771044877104496690Salmonella enterica subsp. enterica serovar Agona str. SL483,tRNA-Ser1e-0858.5
NC_011083:1173802:11800461180046118013590Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,tRNA-Ser1e-0858.5
NC_016863:1128381:11329561132956113304085Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1tRNA-Ser3e-0857.4
NC_003197:1170746:11753211175321117540585Salmonella typhimurium LT2, complete genometRNA-Ser3e-0857.4