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Query: NC_011080:4461851:4463794 Salmonella enterica subsp. enterica serovar Newport str. SL254,

Start: 4463794, End: 4464237, Length: 444

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: The SL254 strain is an MDR strain from one of two distinct lineages of the Newport serovar. Salmonella enterica subsp. enterica serovar Newport is common worldwide. Outbreak investigations and targeted studies have identified dairy cattle as the main reservoir this serotype. Antimicrobial resistance (Newport MDR-AmpC) is particularly problematic in this serotype, and the prevalence of Newport MDR-AmpC isolates from humans in the United States has increased from 0% during 1996-1997 to 26% in 2001. MDR strains have been recorded as resistant to ampicillin, chloramphenicol, streptomycin, sulphonamides and tetracycline (ACSSuT) and many of these strains show intermediate or full resistance to third-generation cephalosporins, kanamycin, potentiated sulphonamides, and gentamicin. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_011294:4327904:432984743298474330302456Salmonella enterica subsp. enterica serovar Enteritidis strlipoprotein7e-74275
NC_011274:4305812:430775543077554308210456Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91lipoprotein7e-74275
NC_011205:4486142:448808544880854488528444Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein8e-74275
NC_011083:4466634:446857744685774469020444Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,hypothetical protein8e-74275
NC_016831:4286000:428810542881054288560456Salmonella enterica subsp. enterica serovar Gallinarum/pullorumputative lipoprotein2e-73274
NC_011094:4361238:436318143631814363624444Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-71266
NC_006511:4225455:422739842273984227841444Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative lipoprotein7e-71265
NC_011147:4221000:422308542230854223528444Salmonella enterica subsp. enterica serovar Paratyphi A strlipoprotein7e-71265
NC_003197:4470683:447262644726264473081456Salmonella typhimurium LT2, complete genomeputative outer membrane lipoprotein7e-71265
NC_016810:4491975:449391844939184494373456Salmonella enterica subsp. enterica serovar Typhimurium strputative lipoprotein7e-71265
NC_016856:4482845:448616844861684486623456Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative outer membrane lipoprotein7e-71265
NC_016857:4491976:449391944939194494374456Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative outer membrane lipoprotein7e-71265
NC_016863:4431831:443377444337744434229456Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative outer membrane lipoprotein7e-71265
NC_017046:4490500:449257944925794493034456Salmonella enterica subsp. enterica serovar Typhimurium str. 798lipoprotein7e-71265
NC_016860:4575772:457771545777154578158444Salmonella enterica subsp. enterica serovar Typhimurium strputative outer membrane lipoprotein1e-70264
NC_010102:4396500:439858243985824399037456Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein1e-70264
NC_011149:4390315:439225843922584392701444Salmonella enterica subsp. enterica serovar Agona str. SL483,hypothetical protein2e-70263
NC_016832:4288980:429092342909234291366444Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,hypothetical protein6e-70262
NC_003198:4315807:431775043177504318205456Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative lipoprotein5e-70262
NC_004631:4300457:430240043024004302855456Salmonella enterica subsp. enterica serovar Typhi Ty2, completeputative lipoprotein5e-70262
NC_012125:4400636:440257944025794403034456Salmonella enterica subsp. enterica serovar Paratyphi C strainlipoprotein1e-69261
NC_006905:4405301:440724444072444407699456Salmonella enterica subsp. enterica serovar Choleraesuis strputative outer membrane lipoprotein1e-68258
NC_010067:3310336:335581233558123356255444Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, completehypothetical protein1e-63241
NC_020181:3585898:361670036167003617107408Enterobacter aerogenes EA1509E, complete genomehypothetical protein3e-0754.3