Pre_GI: BLASTP Hits

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Query: NC_010322:1:15397 Pseudomonas putida GB-1 chromosome, complete genome

Start: 15397, End: 16176, Length: 780

Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: Pseudomonas putida strain GB-1, a fresh water, Gram-negative gamma-proteobacterium, is a genetically tractable, robust manganese (Mn) oxidizer, and as such, is an ideal model for unraveling the catalytic mechanism for, and the molecular regulation of Mn(IV) oxide production and its eventual accumulation on the cell surface at the onset of stationary phase. Since its isolation from Green Bay nearly 20 years ago by Ken Nealson’s group (then at the Center for Great Lakes Studies, Univ. Wisconsin-Milwaukee, USA), it has been the non spore-forming, model organism (along with the closely-related strain MnB1) for molecular genetic studies of Mn(II) oxidization, protein transport and biofilm formation and for biochemical studies on protein purification and Mn(III)-pyoverdine binding. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_009512:1:146151461515394780Pseudomonas putida F1, complete genomehypothetical protein2e-119428
NC_010501:1:146351463515414780Pseudomonas putida W619, complete genomehypothetical protein2e-119428
NC_010501:5735656:574156457415645742346783Pseudomonas putida W619, complete genomehypothetical protein3e-94344
NC_015733:5955467:596331259633125964094783Pseudomonas putida S16 chromosome, complete genomehypothetical protein3e-91334
NC_002947:6123608:612964061296406130422783Pseudomonas putida KT2440, complete genomecytochrome c family protein9e-85313
NC_009439:2427120:245141424514142452256843Pseudomonas mendocina ymp, complete genomehypothetical protein2e-84312
NC_009434:3611738:365469436546943655344651Pseudomonas stutzeri A1501, complete genomecytochrome c family protein8e-79293
NC_017986:3283433:329094732909473291720774Pseudomonas putida ND6 chromosome, complete genomehypothetical protein2e-78291
NC_010943:2465976:247252224725222473292771Stenotrophomonas maltophilia K279a, complete genomeputative cytochrome c family protein7e-45180
NC_016616:1091606:110321111032111103885675Dechlorosoma suillum PS chromosome, complete genomecytochrome C5e-35147
NC_016616:2768053:279206827920682792730663Dechlorosoma suillum PS chromosome, complete genomecytochrome C3e-34145
NC_018697:1343756:136737313673731367927555Cycloclasticus sp. P1 chromosome, complete genomeCytochrome c family protein5e-34144
NC_018868:619113:633021633021633611591Simiduia agarivorans SA1 = DSM 21679 chromosome, complete genomecytochrome c family protein2e-33142
NC_014315:1463383:1474188147418814753361149Nitrosococcus watsoni C-113 chromosome, complete genomecytochrome c class I4e-21101
NC_007484:1975322:1985057198505719862051149Nitrosococcus oceani ATCC 19707, complete genomeCytochrome c, class I2e-2099.8
NC_008009:5139896:515901951590195159573555Acidobacteria bacterium Ellin345, complete genomehypothetical protein1e-1067.4
NC_014355:665000:665456665456666073618Candidatus Nitrospira defluvii, complete genomeputative cytochrome c3e-0652.8