Pre_GI: BLASTN Hits

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Query: NC_009664:3718927 Kineococcus radiotolerans SRS30216, complete genome

Start: 3718927, End: 3747055, Length: 28129

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_015671:15408601540860156478123922Cellvibrio gilvus ATCC 13127 chromosome, complete genome01049BLASTN svgBLASTP svg
NC_015588:19657871965787198857522789Isoptericola variabilis 225 chromosome, complete genome0918BLASTN svgBLASTP svg
NC_018750:20052292005229203059225364Streptomyces venezuelae ATCC 10712, complete genome0916BLASTN svgBLASTP svg
NC_015514:24146172414617243874024124Cellulomonas fimi ATCC 484 chromosome, complete genome0908BLASTN svgBLASTP svg
NC_003888:23059012305901232945223552Streptomyces coelicolor A3(2), complete genome0844BLASTN svgBLASTP svg
NC_014151:23120002312000233474222743Cellulomonas flavigena DSM 20109 chromosome, complete genome0825BLASTN svgBLASTP svg
NC_021177:19229301922930194704124112Streptomyces fulvissimus DSM 40593, complete genome0807BLASTN svgBLASTP svg
NC_010572:62934176293417631646623050Streptomyces griseus subsp. griseus NBRC 13350, complete genome0805BLASTN svgBLASTP svg
NC_012803:13022611302261132380421544Micrococcus luteus NCTC 2665, complete genome0803BLASTN svgBLASTP svg
NC_014210:3763940*3763940379109927160Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,0741BLASTN svgBLASTP svg
NC_015953:17564931756493177842421932Streptomyces sp. SirexAA-E chromosome, complete genome0733BLASTN svgBLASTP svg
NC_013169:1661135*1661135168009918965Kytococcus sedentarius DSM 20547, complete genome0726BLASTN svgBLASTP svg
NC_010617:14289021428902145226023359Kocuria rhizophila DC2201, complete genome1e-166595BLASTN svgBLASTP svg
NC_013510:1786194*1786194181369827505Thermomonospora curvata DSM 43183, complete genome3e-136494BLASTN svgBLASTP svg
NC_009480:1261961*1261961128733125371Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete2e-131478BLASTN svgBLASTP svg
NC_013441:27888062788806282218133376Gordonia bronchialis DSM 43247, complete genome9e-90339BLASTN svgBLASTP svg
NC_008726:39159793915979394187225894Mycobacterium vanbaalenii PYR-1, complete genome5e-82313BLASTN svgBLASTP svg
NC_010407:17752271775227180054825322Clavibacter michiganensis subsp. sepedonicus chromosome, complete4e-49204BLASTN svgBLASTP svg
NC_019673:16566801656680168172225043Saccharothrix espanaensis DSM 44229 complete genome5e-42180BLASTN svgBLASTP svg
NC_014210:37421123742112376235620245Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,7e-29137BLASTN svgBLASTP svg
NC_013235:40455894045589406814822560Nakamurella multipartita DSM 44233, complete genome3e-22115BLASTN svgBLASTP svg
NC_004369:22039472203947222766523719Corynebacterium efficiens YS-314, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_012791:72181372181376114739335Variovorax paradoxus S110 chromosome 1, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007947:1556437*1556437158119324757Methylobacillus flagellatus KT, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015186:28848662884866290438219517Acidiphilium multivorum AIU301, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_019964:1961237*1961237198608224846Halovivax ruber XH-70, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_010172:575005750011716259663Methylobacterium extorquens PA1, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_009956:883548835411789329540Dinoroseobacter shibae DFL 12 plasmid pDSHI02, complete sequence5e-0867.9BLASTN svgBLASTP svg
NC_008752:3902637*3902637393751334877Acidovorax avenae subsp. citrulli AAC00-1, complete genome5e-0867.9BLASTN svgBLASTP svg
NC_015379:89441*8944111781628376Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,8e-0763.9BLASTN svgBLASTP svg
NC_007508:1446526*1446526147198625461Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome8e-0763.9BLASTN svgBLASTP svg
NC_015387:19657111965711198901123301Marinithermus hydrothermalis DSM 14884 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg