Pre_GI Gene

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Host: NC_009480 NEIGHBOURS BLASTN Download Island sequence Download Island gene sequence(s)

NC_009480:1261961 Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Phytopathogen that causes bacterial wilt and canker of tomato (Lycopersicon esculentum). This is considered to be the most important bacterial disease of tomato causing substantial economic losses worldwide. Bacteria enter the plant by wounds on root or stem and then find their way into the xylem allowing a massive systemic colonization. The first stage of the disease is characterized by unilateral wilting of leaves. Wilting then spreads to all leaves, canker lesions develop on the stem and the plant dies. If infection occurs at a late stage of plant development, plants can survive and yield fruit that may have spots, so called bird's eyes. Often the seeds will be infected and this has been the major source for outbreaks of Clavibacter michiganensis subsp. michiganensis infections in agriculture. Members of the Clavibacter genus are known to produce antimicrobial compounds.

This island contains ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

StartEndLengthCDS descriptionQuickGO ontologyBLASTP
126196112635021542putative efflux MFS permeaseQuickGO ontologyBLASTP
12635801263834255hypothetical membrane proteinQuickGO ontology
1263947126501410683-isopropylmalate dehydrogenaseQuickGO ontologyBLASTP
126502312661531131branched-chain amino acid aminotransferaseQuickGO ontologyBLASTP
12662111266984774hypothetical proteinBLASTP
12669871267745759hypothetical protein
126775912692791521glutamyl-tRNA synthetaseQuickGO ontologyBLASTP
12692721270222951putative thioredoxin reductaseQuickGO ontologyBLASTP
127066112742783618hypothetical proteinBLASTP
12744591274689231hypothetical proteinBLASTP
127483412758441011putative K channel protein beta subunitQuickGO ontologyBLASTP
127597912769891011putative potassium channel protein subunitQuickGO ontologyBLASTP
12770571277671615putative transcriptional regulator TetR familyQuickGO ontologyBLASTP
12777271278524798putative short chain dehydrogenaseQuickGO ontologyBLASTP
127859312796961104conserved membrane protein TerC familyQuickGO ontologyBLASTP
12797361279859124misc_RNAQuickGO ontology
12799361280352417hypothetical protein
12803951281033639putative Zn-dependant hydrolaseQuickGO ontologyBLASTP
12813901282106717putative serine protease family S51QuickGO ontology
12821171282803687uracil-DNA glycosylaseQuickGO ontologyBLASTP
12828571283546690putative acetyltransferaseQuickGO ontologyBLASTP
12834281284360933putative membrane bound proteaseQuickGO ontologyBLASTP
12867081287331624putative hexulose-6-phosphate synthaseQuickGO ontologyBLASTP