Some Help

Query: NC_009438:212476 Shewanella putrefaciens CN-32 chromosome, complete genome

Start: 212476, End: 232099, Length: 19624

Host Lineage: Shewanella putrefaciens; Shewanella; Shewanellaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Shewanella putrefaciens is a Gram-negative bacterium. It has been isolated from marine environments, as well as from anaerobic sandstone in the Morrison formation in New Mexico, USA. S. putrefaciens is also a facultative anaerobe with the ability to reduce iron and manganese metabolically; that is, it can use iron and manganese as the terminal electron acceptor in the electron transport chain (in contrast to obligate aerobes which must use oxygen for this purpose). It is also one of the organisms associated with the odor of rotting fish, as it is a marine organism which produces trimethylamines (hence the species name putrefaciens, from putrid). This genus includes species that inhabit a wide range of environments and are capable of utilizing a wide variety of electron acceptors during anaerobic respiration including some insoluble metal oxides while using very few carbon sources such as lactate or acetate. This group of organisms have been studied extensively for their electron transport systems. This species, along with Shewanella algae, are the only Shewanella spp. to be found in clinical speciments. Normally found in marine environments in warmer temperatures, infections seem to occur more frequently in countries with a warm climate and in other countries during warm summer months.

Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia

Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008750:45023345023347009919867Shewanella sp. W3-18-1, complete genome023290BLASTN svgBLASTP svg
NC_008345:41078474107847413795830112Shewanella frigidimarina NCIMB 400, complete genome06520BLASTN svgBLASTP svg
NC_007951:3655088*3655088368859933512Burkholderia xenovorans LB400 chromosome 1, complete sequence06347BLASTN svgBLASTP svg
NC_007951:17112231711223173758426362Burkholderia xenovorans LB400 chromosome 1, complete sequence06347BLASTN svgBLASTP svg
NC_007952:15875001587500160777020271Burkholderia xenovorans LB400 chromosome 2, complete sequence06346BLASTN svgBLASTP svg
NC_011901:491783*49178352043828656Thioalkalivibrio sulfidophilus HL-EbGr7 chromosome, complete05997BLASTN svgBLASTP svg
NC_010611:24083924083927225731419Acinetobacter baumannii ACICU, complete genome05894BLASTN svgBLASTP svg
NC_010410:36068263606826369540988584Acinetobacter baumannii AYE, complete genome05894BLASTN svgBLASTP svg
NC_014836:29195082919508294399924492Desulfurispirillum indicum S5 chromosome, complete genome04641BLASTN svgBLASTP svg
NC_007722:21720002172000219518323184Erythrobacter litoralis HTCC2594, complete genome02430BLASTN svgBLASTP svg
NC_014836:16065871606587162498218396Desulfurispirillum indicum S5 chromosome, complete genome01691BLASTN svgBLASTP svg
NC_008750:23320002332000235419622197Shewanella sp. W3-18-1, complete genome01124BLASTN svgBLASTP svg
NC_015740:29985002998500301617517676Pseudomonas stutzeri ATCC 17588 = LMG 11199 chromosome, complete0983BLASTN svgBLASTP svg
NC_014366:58834758834761001621670Gamma proteobacterium HdN1, complete genome9e-77295BLASTN svgBLASTP svg
NC_009434:3611738*36117383748875137138Pseudomonas stutzeri A1501, complete genome4e-54220BLASTN svgBLASTP svg
NC_009999:38832388326239723566Shewanella baltica OS195 plasmid pS19502, complete sequence4e-1177.8BLASTN svgBLASTP svg
NC_009648:38036223803622385072747106Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome4e-1177.8BLASTN svgBLASTP svg
NC_004431:4270305*4270305431798947685Escherichia coli CFT073, complete genome2e-0971.9BLASTN svgBLASTP svg
NC_008740:3520500*3520500356433043831Marinobacter aquaeolei VT8, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_014019:35433893543389356611222724Bacillus megaterium QM B1551 chromosome, complete genome2e-0661.9BLASTN svgBLASTP svg