Pre_GI: BLASTP Hits

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Query: NC_009089:581655:585695 Clostridium difficile 630, complete genome

Start: 585695, End: 586009, Length: 315

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013895:1332832:136905313690531369367315Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein9e-53205
NC_013798:1778758:178574717857471786061315Streptococcus gallolyticus UCN34, complete genomeTn916 conserved hypothetical protein9e-53205
NC_016630:1247251:126440812644081264722315Filifactor alocis ATCC 35896 chromosome, complete genomehypothetical protein9e-52201
NC_009089:3889811:390997839099783910292315Clostridium difficile 630, complete genomeconjugative transposon conserved hypothetical protein9e-50195
NC_013316:4095905:410237141023714102694324Clostridium difficile R20291, complete genomeconjugative transposon protein1e-41168
NC_013315:4015119:402158540215854021908324Clostridium difficile CD196 chromosome, complete genomeconjugative transposon protein1e-41168
NC_017179:4023139:402960540296054029928324Clostridium difficile BI1, complete genomeconjugative transposon protein1e-41168
NC_015977:2966971:298380429838042984127324Roseburia hominis A2-183 chromosome, complete genomeconjugative transposon protein1e-39161
NC_009089:428075:453006453006453332327Clostridium difficile 630, complete genomeconjugative transposon protein5e-37152
NC_009089:3935500:396363539636353963961327Clostridium difficile 630, complete genomeconjugative transposon protein3e-28123
NC_004668:2198027:226634122663412266655315Enterococcus faecalis V583, complete genomehypothetical protein1e-25115
NC_000964:521975:532483532483532863381Bacillus subtilis subsp. subtilis str. 168, complete genomehypothetical protein3e-0753.9