Pre_GI: BLASTP Hits

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Query: NC_009089:3889811:3899428 Clostridium difficile 630, complete genome

Start: 3899428, End: 3901809, Length: 2382

Host Lineage: Peptoclostridium difficile; Peptoclostridium; Peptostreptococcaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain is the epidemic type X variant that has been extensively studied in research and clinical laboratories. It produces both toxin A, and B. Causative agent of pseudomembranous colitis. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This species is now recognized as the major causative agent of pseudomembranous colitis (inflammation of the colon) and diarrhea that may occur following antibiotic treatment. This bacterium causes a wide spectrum of disease, ranging from mild, self-limiting diarrhea to serious diarrhea and, in some cases, complications such as pseudomembrane formation, toxic megacolon (dilation of the colon) and peritonitis, which often lead to lethality among patients. The bacteria produce high molecular mass polypeptide cytotoxins, A and B. Some strains produce only one of the toxins, others produce both. Toxin A causes inflammatory reaction involving hypersecretion of fluid and hemorrhagic necrosis through triggering cytokine release by neutrophils. Alteration of intestinal microbial balance with antibiotic therapy and increased exposure to the bacterium in a hospital setting allows C. difficile to colonize susceptible individuals. Moreover, it has been shown that subinhibitory concentrations of antibiotics promote increased toxin production by C. difficile.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016630:1247251:1255296125529612574732178Filifactor alocis ATCC 35896 chromosome, complete genomemembrane protein0880
NC_013895:1332832:1359888135988813620652178Clostridiales genomosp. BVAB3 str. UPII9-5 chromosome, completehypothetical protein0870
NC_021175:1597613:1600063160006316022402178Streptococcus oligofermentans AS 1.3089, complete genomeconjugative transposon membrane protein0870
NC_009089:581655:5930075930075951752169Clostridium difficile 630, complete genomeconjugative transposon membrane protein0868
NC_009089:581655:58476958476960656321795Clostridium difficile 630, complete genome0864
NC_009089:428075:4425304425304447402211Clostridium difficile 630, complete genomeconjugative transposon protein0700
NC_017341:428500:4349564349564369832028Staphylococcus aureus subsp. aureus str. JKD6008 chromosome,hypothetical protein0696
NC_002758:434462:4441264441264461532028Staphylococcus aureus subsp. aureus Mu50, complete genomehypothetical protein0695
NC_017347:424500:4312944312944333212028Staphylococcus aureus subsp. aureus T0131 chromosome, completeConjugative transposon membrane protein0692
NC_009089:3935500:3952768395276839549692202Clostridium difficile 630, complete genome0683
NC_013316:4095905:4113745411374541158802136Clostridium difficile R20291, complete genomeconjugative transposon protein0683
NC_013315:4015119:4032959403295940350942136Clostridium difficile CD196 chromosome, complete genomeconjugative transposon protein0683
NC_017179:4023139:4040979404097940431142136Clostridium difficile BI1, complete genomeconjugative transposon protein0683
NC_004668:2198027:2199046219904622011602115Enterococcus faecalis V583, complete genomehypothetical protein0642
NC_009089:3935500:3953518395351839549721455Clostridium difficile 630, complete genome6e-172605
NC_007103:230872:2385482385482409892442Bacillus cereus E33L plasmid pE33L466, complete sequencepossible membrane protein3e-39164
NC_017201:93500:1005121005121034692958Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB26,hypothetical protein2e-38161
NC_014172:100718:1111041111041135692466Bacillus thuringiensis BMB171 plasmid pBMB171, complete sequencehypothetical protein2e-38161
NC_017199:31500:5456854568576033036Bacillus thuringiensis serovar finitimus YBT-020 plasmid pBMB28,hypothetical protein9e-22105
NC_013450:45782:5621256212581251914Staphylococcus aureus subsp. aureus ED98, complete genometransposon-related protein3e-1481.3
NC_002952:1349006:1354503135450313563501848Staphylococcus aureus subsp. aureus MRSA252, complete genomehypothetical protein6e-0757
NC_017347:2724313:2729950272995027317971848Staphylococcus aureus subsp. aureus T0131 chromosome, completeRibonuclease E domain-containing protein1e-0655.8
NC_007793:1633080:1634116163411616359631848Staphylococcus aureus subsp. aureus USA300, complete genomehypothetical protein1e-0655.8
NC_009848:582775:6120136120136143942382Bacillus pumilus SAFR-032, complete genomehypothetical protein2e-0655.1