Pre_GI: BLASTP Hits

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Query: NC_008262:784878:820431 Clostridium perfringens SM101, complete genome

Start: 820431, End: 820913, Length: 483

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This is a enterotoxin-producing food poisoning strain. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_008261:817295:840440840440840922483Clostridium perfringens ATCC 13124, complete genometranscriptional regulator, AsnC family4e-89326
NC_020291:1810527:181602818160281816507480Clostridium saccharoperbutylacetonicum N1-4(HMT), complete genometranscriptional regulator, AsnC family2e-76284
NC_009617:4761000:477468747746874775166480Clostridium beijerinckii NCIMB 8052 chromosome, complete genomeAsnC family transcriptional regulator3e-76283
NC_010723:2873886:288693528869352887414480Clostridium botulinum E3 str. Alaska E43, complete genometranscriptional regulator, AsnC family6e-72269
NC_010674:3049500:306338830633883063867480Clostridium botulinum B str. Eklund 17B, complete genometranscriptional regulator, AsnC family8e-72268
NC_008593:609723:616718616718617200483Clostridium novyi NT, complete genometranscription regulator (Lrp/AsnC family) BH33515e-63239
NC_017208:4845281:486722148672214867718498Bacillus thuringiensis serovar chinensis CT-43 chromosome, completeAsnC family transcriptional regulator3e-34144
NC_014171:4708282:473116047311604731657498Bacillus thuringiensis BMB171 chromosome, complete genomeAsnC family transcriptional regulator3e-34144
NC_013741:424278:425724425724426212489Archaeoglobus profundus DSM 5631, complete genometranscriptional regulator, AsnC family2e-31134
NC_013202:2042776:206226820622682062762495Halomicrobium mukohataei DSM 12286, complete genometranscriptional regulator, AsnC family2e-26118
NC_006396:1097000:111935011193501119844495Haloarcula marismortui ATCC 43049 chromosome I, complete sequenceleucine responsive regulatory protein2e-25114
NC_009831:5107924:510792451079245108403480Shewanella sediminis HAW-EB3, complete genometranscriptional regulator, AsnC family1e-1168.9
NC_010995:20181:455864558646134549Cellvibrio japonicus Ueda107, complete genometranscriptional regulator, AsnC family8e-1166.2
NC_012997:3651993:366989736698973670379483Teredinibacter turnerae T7901, complete genometranscriptional regulator, AsnC family1e-0859.3
NC_019896:1483073:149670214967021497175474Bacillus subtilis subsp. subtilis str. BSP1 chromosome, completetranscriptional regulator AzlB2e-0651.6
NC_020244:2509000:254498325449832545495513Bacillus subtilis XF-1, complete genometranscriptional regulator (Lrp/AsnC family)2e-0651.6
NC_015137:868944:885259885259885741483Burkholderia sp. CCGE1001 chromosome 2, complete sequenceAsnC family transcriptional regulator3e-0651.2
NC_014752:617987:638017638017638481465Neisseria lactamica ST-640, complete genomeAsnC-family transcriptional regulator2e-0651.2
NC_013926:614206:633121633121633582462Aciduliprofundum boonei T469 chromosome, complete genometranscriptional regulator, AsnC family3e-0650.8
NC_007651:3560652:359561335956133596071459Burkholderia thailandensis E264 chromosome I, complete sequencetranscriptional regulator, AsnC family4e-0650.4
NC_006350:3865584:389425138942513894742492Burkholderia pseudomallei K96243 chromosome 1, complete sequenceputative AsnC-family transcriptional regulator5e-0650.1
NC_011294:1006630:100823110082311008692462Salmonella enterica subsp. enterica serovar Enteritidis strtranscriptional regulator9e-0649.3