Pre_GI: BLASTP Hits

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Query: NC_008228:3608909:3610784 Pseudoalteromonas atlantica T6c, complete genome

Start: 3610784, End: 3611185, Length: 402

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_014541:1280835:129824212982421298646405Ferrimonas balearica DSM 9799 chromosome, complete genomeouter membrane transport energization protein ExbD6e-43172
NC_008577:3125675:312811131281113128515405Shewanella sp. ANA-3 chromosome 1, complete sequenceBiopolymer transport protein ExbD/TolR3e-38156
NC_008322:2983951:298829729882972988701405Shewanella sp. MR-7, complete genomeBiopolymer transport protein ExbD/TolR3e-38156
NC_008321:2922000:292447329244732924877405Shewanella sp. MR-4, complete genomeBiopolymer transport protein ExbD/TolR3e-38156
NC_009092:2902171:291024129102412910645405Shewanella loihica PV-4, complete genomeBiopolymer transport protein ExbD/TolR3e-38156
NC_011663:3181579:318345131834513183855405Shewanella baltica OS223 chromosome, complete genomebiopolymer transport protein ExbD/TolR4e-38156
NC_009052:1899954:192236319223631922767405Shewanella baltica OS155, complete genomeBiopolymer transport protein ExbD/TolR1e-37154
NC_014012:3356629:335725133572513357661411Shewanella violacea DSS12, complete genomeTonB system transport protein ExbD24e-36149
NC_014315:2659479:267831626783162678726411Nitrosococcus watsoni C-113 chromosome, complete genomebiopolymer transport protein ExbD/TolR5e-34142
NC_020409:77414:792397923979649411Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completeBiopolymer transport protein exbD21e-28125
NC_006138:3355028:336199833619983362402405Desulfotalea psychrophila LSv54, complete genomebiopolymer transport protein (ExbD2)4e-25113
NC_014761:1321187:134156413415641341959396Oceanithermus profundus DSM 14977 chromosome, complete genomebiopolymer transport protein exbd/tolr3e-1580.1
NC_008011:860000:873921873921874355435Lawsonia intracellularis PHE/MN1-00, complete genomeBiopolymer transport protein4e-1373.6
NC_000911:15937:325243252432952429Synechocystis sp. PCC 6803, complete genomebiopolymer transport protein2e-1271.2
NC_017039:15937:325243252432952429Synechocystis sp. PCC 6803 substr. PCC-P, complete genomebiopolymer transport ExbD protein2e-1271.2
NC_017052:15937:325243252432952429Synechocystis sp. PCC 6803 substr. PCC-N, complete genomebiopolymer transport ExbD protein2e-1271.2
NC_017277:15937:325243252432952429Synechocystis sp. PCC 6803, complete genomebiopolymer transport ExbD protein2e-1271.2
NC_011026:2269986:228250722825072283007501Chloroherpeton thalassium ATCC 35110, complete genomeBiopolymer transport protein ExbD/TolR2e-1271.2
NC_013520:91961:113611113611114015405Veillonella parvula DSM 2008, complete genomeBiopolymer transport protein ExbD/TolR3e-1270.5
NC_007404:387827:389505389505389912408Thiobacillus denitrificans ATCC 25259, complete genomebiopolymer transport protein, ExbD/TolR family3e-1270.5
NC_011296:909558:929488929488929892405Thermodesulfovibrio yellowstonii DSM 11347, complete genomeTolR protein3e-1167.4
NC_002977:2407392:242890124289012429305405Methylococcus capsulatus str. Bath, complete genomebiopolymer transport protein, ExbD/TolR family3e-1167.4
NC_019940:3480690:350226135022613502650390Thioflavicoccus mobilis 8321 chromosome, complete genomebiopolymer transport protein1e-1065.1
NC_014540:2908912:291779329177932918215423Burkholderia sp. CCGE1003 chromosome 2, complete sequenceBiopolymer transport protein ExbD/TolR1e-0962
NC_003902:2469500:250536925053692505806438Xanthomonas campestris pv. campestris str. ATCC 33913, completebiopolymer transport protein1e-0962
NC_013520:1936209:195357719535771953981405Veillonella parvula DSM 2008, complete genomeBiopolymer transport protein ExbD/TolR1e-0961.6
NC_012440:373863:380844380844381248405Persephonella marina EX-H1, complete genomebiopolymer transport protein ExbD1e-0961.6
NC_003919:2435058:243459724345972435061465Xanthomonas axonopodis pv. citri str. 306, complete genomebiopolymer transport protein3e-0960.5
NC_015276:2171355:217446821744682174890423Marinomonas mediterranea MMB-1 chromosome, complete genomeBiopolymer transport protein ExbD/TolR4e-0960.5
NC_011138:831585:835683835683835877195Alteromonas macleodii 'Deep ecotype', complete genomeTonB system transport protein ExbD27e-0959.3
NC_016024:156000:161382161382161813432Candidatus Chloracidobacterium thermophilum B chromosome chromosomebiopolymer transport protein1e-0858.9
NC_014323:3195178:321381532138153214234420Herbaspirillum seropedicae SmR1 chromosome, complete genomebiopolymer transport ExbD/TolR protein1e-0858.5
NC_011206:1917408:193541219354121935801390Acidithiobacillus ferrooxidans ATCC 53993, complete genomeBiopolymer transport protein ExbD/TolR1e-0858.5
NC_011761:2031876:204989520498952050269375Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeExbD/TolR family biopolymer transport protein2e-0858.2
NC_014118:2417838:243539924353992435824426Burkholderia sp. CCGE1002 chromosome chromosome 2, completeBiopolymer transport protein ExbD/TolR3e-0857.4
NC_014008:354292:356113356113356520408Coraliomargarita akajimensis DSM 45221 chromosome, complete genomeBiopolymer transport protein ExbD/TolR3e-0857
NC_002977:652481:668848668848669273426Methylococcus capsulatus str. Bath, complete genomebiopolymer transport protein, ExbD/TolR family5e-0856.6
NC_013209:2414500:242392024239202424369450Acetobacter pasteurianus IFO 3283-01, complete genomeExbD/TolR4e-0856.6
NC_017100:2414075:242512724251272425576450Acetobacter pasteurianus IFO 3283-03, complete genomeExbD/TolR4e-0856.6
NC_017108:2413000:242246424224642422913450Acetobacter pasteurianus IFO 3283-12, complete genomeExbD/TolR4e-0856.6
NC_017111:2413000:242248224224822422931450Acetobacter pasteurianus IFO 3283-32, complete genomeExbD/TolR4e-0856.6
NC_017121:2413000:242246924224692422918450Acetobacter pasteurianus IFO 3283-07, complete genomeExbD/TolR4e-0856.6
NC_017125:2415500:242510724251072425556450Acetobacter pasteurianus IFO 3283-22, complete genomeExbD/TolR4e-0856.6
NC_017146:2416000:242514924251492425598450Acetobacter pasteurianus IFO 3283-26, complete genomeExbD/TolR4e-0856.6
NC_015311:2281711:230005323000532300709657Prevotella denticola F0289 chromosome, complete genometransport energizing protein, ExbD/TolR family6e-0856.2
NC_012660:4149487:416806741680674168495429Pseudomonas fluorescens SBW25 chromosome, complete genomebiopolymer transport protein1e-0755.1
NC_016147:1788219:178821917882191788698480Pseudoxanthomonas spadix BD-a59 chromosome, complete genomebiopolymer transport protein1e-0755.1
NC_015851:181721:185957185957186355399Acidithiobacillus caldus SM-1 megaplasmid, complete sequencebiopolymer transport protein ExbD/TolR3e-0753.9
NC_013446:3209000:322579332257933226224432Comamonas testosteroni CNB-2, complete genomeBiopolymer transport protein ExbD/TolR3e-0753.5
NC_014008:354292:356520356520356954435Coraliomargarita akajimensis DSM 45221 chromosome, complete genomeBiopolymer transport protein ExbD/TolR4e-0753.1
NC_010794:2157920:217854721785472178966420Methylacidiphilum infernorum V4, complete genomeBiopolymer transport protein5e-0753.1
NC_015185:792933:794814794814795242429Desulfurobacterium thermolithotrophum DSM 11699 chromosome,Biopolymer transport protein ExbD/TolR7e-0752.8
NC_002929:3568106:356810635681063568564459Bordetella pertussis Tohama I, complete genomeputative TolR-like translocation protein6e-0752.8
NC_014733:107394:133229133229133636408Methylovorus sp. MP688 chromosome, complete genomebiopolymer transport protein exbd/tolr1e-0651.6
NC_014734:1428282:143237614323761432987612Paludibacter propionicigenes WB4 chromosome, complete genomeouter membrane transport energization protein exbd2e-0650.8
NC_005773:208000:230750230750231175426Pseudomonas syringae pv. phaseolicola 1448A, complete genomeTonB system transport protein ExbD12e-0650.8
NC_015638:1885041:190542119054211905813393Lacinutrix sp. 5H-3-7-4 chromosome, complete genomeBiopolymer transport protein ExbD/TolR2e-0650.8
NC_008800:3955284:397258139725813973006426Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,biopolymer transport protein ExbD2e-0650.8
NC_011206:863987:875159875159875557399Acidithiobacillus ferrooxidans ATCC 53993, complete genomeBiopolymer transport protein ExbD/TolR3e-0650.4
NC_011761:684969:696141696141696539399Acidithiobacillus ferrooxidans ATCC 23270 chromosome, completeExbD/TolR family biopolymer transport protein3e-0650.4
NC_020126:1830147:183607618360761836573498Myxococcus stipitatus DSM 14675, complete genomebiopolymer ExbD/TolR family transporter3e-0650.4
NC_015224:3820338:385084438508443851269426Yersinia enterocolitica subsp. palearctica 105.5R(r) chromosome,biopolymer transport protein ExbD3e-0650.4
NC_012440:1874896:187450118745011874899399Persephonella marina EX-H1, complete genomebiopolymer transport protein ExbD/TolR4e-0650.1
NC_006155:3992818:401514240151424015567426Yersinia pseudotuberculosis IP 32953, complete genomeExbD/TolR-family transport protein5e-0649.7
NC_010634:3905369:392659939265993927030432Yersinia pseudotuberculosis PB1/+, complete genomeTonB system transport protein ExbD5e-0649.7
NC_018080:4465618:448459944845994485039441Pseudomonas aeruginosa DK2 chromosome, complete genomeTolR protein6e-0649.3
NC_008463:4566976:459652945965294596969441Pseudomonas aeruginosa UCBPP-PA14, complete genomeTolR protein6e-0649.3
NC_011770:4763506:478338547833854783825441Pseudomonas aeruginosa LESB58, complete genomeTolR protein6e-0649.3
NC_002516:1031386:105456610545661055006441Pseudomonas aeruginosa PAO1, complete genomeTolR protein6e-0649.3