Pre_GI: BLASTP Hits

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Query: NC_007613:1353500:1370334 Shigella boydii Sb227, complete genome

Start: 1370334, End: 1370822, Length: 489

Host Lineage: Shigella boydii; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic that took place in China in the 1950s. Causes dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella boydii is uncommon except in India, where it was first isolated. Progression to clinical dysentery occurs in most patients infected with this organism.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003198:4453457:44737534473753450773033978Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-40164
NC_003198:4453457:447582044758204476305486Salmonella enterica subsp. enterica serovar Typhi str. CT18,putative phage tail protein7e-40162
NC_009436:1466580:148955414895541490039486Enterobacter sp. 638, complete genomephage P2 GpU family protein1e-37155
NC_014837:3739408:375496637549663755451486Pantoea sp. At-9b chromosome, complete genomeP2 GpU family protein1e-36151
NC_009648:3803622:380478838047883805267480Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genomeputative prophage tail protein3e-33140
NC_010465:2582080:258500725850072585471465Yersinia pseudotuberculosis YPIII, complete genomeP2 GpU family protein4e-33140
NC_020181:5130513:516738451673845167869486Enterobacter aerogenes EA1509E, complete genomePhage-related tail protein1e-32139
NC_016816:674171:678437678437678940504Pantoea ananatis LMG 5342, complete genomeP2 GpU family protein5e-32136
NC_014228:3022903:302824430282443028708465Xenorhabdus nematophila ATCC 19061, complete genomehypothetical protein1e-31135
NC_009801:995396:101492410149241015403480Escherichia coli E24377A, complete genomephage protein gpU2e-31134
NC_012779:3016327:302355130235513023979429Edwardsiella ictaluri 93-146, complete genomehypothetical protein2e-30131
NC_007963:1552761:156822515682251568668444Chromohalobacter salexigens DSM 3043, complete genomephage P2 GpU1e-30131
NC_007712:3163000:318404331840433184507465Sodalis glossinidius str. 'morsitans', complete genomeputative phage tail protein1e-30131
NC_007712:1997010:201266220126622013126465Sodalis glossinidius str. 'morsitans', complete genomeputative phage tail protein1e-30131
NC_012880:2480000:248836524883652488859495Dickeya dadantii Ech703, complete genomeP2 GpU family protein7e-30129
NC_014323:961825:978063978063978590528Herbaspirillum seropedicae SmR1 chromosome, complete genomebacteriophage P2 phage-related tail U protein8e-30129
NC_015410:2351464:238451223845122384952441Pseudomonas mendocina NK-01 chromosome, complete genomephage P2 GpU protein3e-29127
NC_021150:3771860:378625037862503786693444Azotobacter vinelandii CA6, complete genomePhage P2 GpU protein5e-28123
NC_012560:3771861:378625137862513786694444Azotobacter vinelandii DJ, complete genomePhage P2 GpU protein5e-28123
NC_006155:2084669:209867720986772099162486Yersinia pseudotuberculosis IP 32953, complete genomeputative phage tail protein8e-27119
NC_003902:3544743:354808035480803548481402Xanthomonas campestris pv. campestris str. ATCC 33913, completephage-related tail protein2e-26118
NC_008781:3508784:351572135157213516170450Polaromonas naphthalenivorans CJ2, complete genomephage P2 GpU family protein3e-26117
NC_015856:1182974:118820811882081188765558Collimonas fungivorans Ter331 chromosome, complete genomephage p2 GpU6e-26116
NC_020064:871338:882285882285882767483Serratia marcescens FGI94, complete genomephage protein U9e-26115
NC_015563:4959843:496628349662834966741459Delftia sp. Cs1-4 chromosome, complete genomeP2 GpU family protein2e-2097.8
NC_012724:1914740:192413919241391924636498Burkholderia glumae BGR1 chromosome 1, complete genomePhage protein U3e-2097.4
NC_016845:4077293:408327340832734083599327Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,putative prophage tail protein1e-1685.5
NC_007604:743738:746590746590747510921Synechococcus elongatus PCC 7942, complete genomehypothetical protein5e-1683.6
NC_006576:856014:873361873361874281921Synechococcus elongatus PCC 6301, complete genomehypothetical protein5e-1683.6
NC_017033:1089579:109284410928441093686843Frateuria aurantia DSM 6220 chromosome, complete genomephage protein U8e-1579.7
NC_012881:2310141:232552323255232325903381Desulfovibrio salexigens DSM 2638, complete genomeP2 GpU family protein5e-1477
NC_004129:2234851:223742722374272238272846Pseudomonas fluorescens Pf-5, complete genomepyocin R2_PP, tail formation protein2e-0961.6
NC_009832:2211154:223880522388052239263459Serratia proteamaculans 568, complete genomeP2 GpU family protein2e-0961.2
NC_011415:2248417:226432222643222264750429Escherichia coli SE11 chromosome, complete genomehypothetical protein4e-0960.5
NC_004578:3817330:383293838329383833702765Pseudomonas syringae pv. tomato str. DC3000, complete genomehypothetical protein6e-0960.1
NC_016830:4999946:501770450177045018549846Pseudomonas fluorescens F113 chromosome, complete genomephage protein U7e-0959.7
NC_012416:753500:757164757164757580417Wolbachia sp. wRi, complete genometail protein U, putative2e-0858.2
NC_015381:2109500:211267021126702113425756Burkholderia gladioli BSR3 chromosome 1, complete sequencePhage P2 GpU family protein4e-0857.4
NC_015381:3457784:347469734746973475452756Burkholderia gladioli BSR3 chromosome 1, complete sequencePhage P2 GpU family protein4e-0857.4
NC_012724:3070386:308492230849223085800879Burkholderia glumae BGR1 chromosome 1, complete genomePhage P2 GpU family protein5e-0857
NC_015381:3091500:311565431156543116532879Burkholderia gladioli BSR3 chromosome 1, complete sequencePhage P2 GpU family protein5e-0857
NC_008390:2018201:203723820372382038116879Burkholderia cepacia AMMD chromosome 1, complete sequencephage P2 GpU family protein2e-0754.7
NC_017986:4124335:412773441277344128579846Pseudomonas putida ND6 chromosome, complete genomepyocin R2 PP, tail formation protein5e-0753.5
NC_015733:1976752:198025019802501981095846Pseudomonas putida S16 chromosome, complete genomepyocin R2_PP, tail formation protein1e-0652.4
NC_012846:1837924:185904118590411859502462Bartonella grahamii as4aup, complete genomephage tail protein U57e-0649.7