Pre_GI: BLASTP Hits

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Query: NC_007606:4182188:4183882 Shigella dysenteriae Sd197, complete genome

Start: 4183882, End: 4184058, Length: 177

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013361:5319497:5319497531949753210141518Escherichia coli O26:H11 str. 11368 chromosome, complete genomelysyl-tRNA synthetase2e-26117
NC_010468:4252940:4279750427975042812671518Escherichia coli ATCC 8739, complete genomelysyl-tRNA synthetase7e-26115
CP002797:4411763:4429414442941444309311518Escherichia coli NA114, complete genomeLysyl-tRNA synthetase class II3e-25114
NC_020181:4800298:4800298480029848018151518Enterobacter aerogenes EA1509E, complete genomeLysyl-tRNA synthetase (class II)3e-2097.1
NC_011283:785973:7889007889007904171518Klebsiella pneumoniae 342 chromosome, complete genomelysyl-tRNA synthetase3e-2097.1
NC_014121:4299500:4326114432611443276311518Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, completelysyl-tRNA synthetase4e-1993.2
NC_020260:440000:4436744436744451911518Cronobacter sakazakii Sp291, complete genomelysyl-tRNA ligase2e-1890.9
NC_016612:477407:5023485023485038651518Klebsiella oxytoca KCTC 1686 chromosome, complete genomelysyl-tRNA synthetase2e-1890.9
NC_004631:3030580:3047236304723630487531518Salmonella enterica subsp. enterica serovar Typhi Ty2, completelysyl-tRNA synthetase9e-1889
NC_003198:3042000:3061741306174130632581518Salmonella enterica subsp. enterica serovar Typhi str. CT18,lysyl-tRNA synthetase9e-1889
NC_016832:3020000:3035876303587630373931518Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Lysyl-tRNA synthetase9e-1889
NC_011083:3171171:3190408319040831919251518Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,lysyl-tRNA synthetase LysS9e-1889
NC_013716:5201097:5204030520403052055471518Citrobacter rodentium ICC168, complete genomelysyl-tRNA synthetase8e-1889
NC_012912:3853377:3890805389080538923221518Dickeya zeae Ech1591, complete genomelysyl-tRNA synthetase2e-1684.7
NC_013592:713036:7141437141437156601518Dickeya dadantii Ech586, complete genomelysyl-tRNA synthetase6e-1682.8
NC_020064:3825916:3838418383841838399381521Serratia marcescens FGI94, complete genomelysyl-tRNA synthetase (class II)3e-1580.5
NC_004547:843475:8445828445828460991518Erwinia carotovora subsp. atroseptica SCRI1043, complete genomelysyl-tRNA synthetase3e-1580.5
NC_012779:3176820:3221902322190232234191518Edwardsiella ictaluri 93-146, complete genomelysyl-tRNA synthetase, putative1e-1168.6
NC_016818:859181:8638648638648653931530Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completelysyl-tRNA synthetase3e-1167
NC_008570:3777469:3795335379533537968701536Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomelysyl-tRNA synthetase3e-0960.5
NC_020063:2785652:2797820279782027994121593Enterobacteriaceae bacterium strain FGI 57, complete genomelysyl-tRNA synthetase (class II)2e-0650.8
NC_010531:428000:4291094291094306531545Polynucleobacter necessarius STIR1, complete genomelysyl-tRNA synthetase2e-0650.8
NC_012559:2309566:2316555231655523180661512Laribacter hongkongensis HLHK9, complete genomeSyk6e-0649.7