Pre_GI: BLASTP Hits

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Query: NC_007606:1209132:1223122 Shigella dysenteriae Sd197, complete genome

Start: 1223122, End: 1223760, Length: 639

Host Lineage: Shigella dysenteriae; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. Causes bacillary dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. Shigella dysenteriae is the major cause of Shigella-related deaths in developing nations, mostly in young children.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_010473:1384000:140144014014401402078639Escherichia coli str. K-12 substr. DH10B, complete genomeouter membrane protein W9e-106382
NC_013364:1997891:199929319992931999931639Escherichia coli O111:H- str. 11128, complete genomeouter membrane protein W2e-100364
NC_009801:1392696:141721914172191417857639Escherichia coli E24377A, complete genomeouter membrane protein W3e-100363
NC_020063:2531643:253773625377362538371636Enterobacteriaceae bacterium strain FGI 57, complete genomeouter membrane protein W7e-88323
NC_020211:2882093:291333429133342913966633Serratia marcescens WW4, complete genomeouter membrane protein W2e-62238
NC_012779:1629731:164611516461151646756642Edwardsiella ictaluri 93-146, complete genomeouter membrane protein W3e-60231
NC_012667:504534:525570525570526223654Vibrio cholerae MJ-1236 chromosome 2, complete genomeouter membrane protein W3e-59228
NC_016628:537137:541437541437542081645Vibrio furnissii NCTC 11218 chromosome 2, complete sequenceouter membrane protein W3e-57221
NC_007645:3712272:373099037309903731661672Hahella chejuensis KCTC 2396, complete genomeOuter membrane protein W2e-40165
NC_009074:2117500:211818721181872118831645Burkholderia pseudomallei 668 chromosome I, complete sequenceouter membrane protein, OmpW family1e-1996.3
NC_014910:4316706:433424343342434334938696Alicycliphilus denitrificans BC chromosome, complete genomeompw family protein4e-1994.4
NC_013941:1613595:162764316276431627759117Escherichia coli O55:H7 str. CB9615 chromosome, complete genomehypothetical protein4e-1684.7
NC_013353:1472506:149143714914371491553117Escherichia coli O103:H2 str. 12009, complete genome4e-1684.7
NC_013008:1761165:178155217815521781668117Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-1684.7
NC_011353:1761977:178257617825761782692117Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein4e-1684.7
AP010958:1472506:149143714914371491553117Escherichia coli O103:H2 str. 12009 DNA, complete genome4e-1684.7
NC_017249:8283701:832714083271408327871732Bradyrhizobium japonicum USDA 6, complete genomeouter membrane protein1e-1479.7
NC_004463:1898648:192662119266211927211591Bradyrhizobium japonicum USDA 110, complete genomeouter membrane protein1e-1479.7
NC_009138:2242470:225444522544452255065621Herminiimonas arsenicoxydans, complete genomeputative Outer membrane protein W2e-1479.3
NC_009439:442890:462619462619463311693Pseudomonas mendocina ymp, complete genomeOmpW family protein3e-1478.6
NC_013361:1754346:177470017747001774807108Escherichia coli O26:H11 str. 11368 chromosome, complete genome6e-1477.4
NC_002655:2264773:227149922714992271606108Escherichia coli O157:H7 EDL933, complete genomeputative outer membrane protein6e-1477.4
NC_016147:3023180:302669430266943027386693Pseudoxanthomonas spadix BD-a59 chromosome, complete genomeouter membrane protein2e-1168.9
NC_011353:1716037:173715417371541737270117Escherichia coli O157:H7 str. EC4115 chromosome, complete genomeouter membrane protein W5e-1167.8
NC_008543:2871747:290052529005252901250726Burkholderia cenocepacia HI2424 chromosome 2, complete sequenceOmpW family protein4e-1167.8
NC_013209:2759160:277782427778242778657834Acetobacter pasteurianus IFO 3283-01, complete genomeouter membrane protein OmpW4e-1167.8
NC_011001:63986:908579085791582726Burkholderia cenocepacia J2315 chromosome 2, complete sequenceputative outer membrane protein-OmpW family1e-1066.6
NC_008781:2611702:261818226181822618817636Polaromonas naphthalenivorans CJ2, complete genomeOmpW family protein2e-0962.8
NC_006677:1052031:107172210717221072540819Gluconobacter oxydans 621H, complete genomeOuter membrane channel lipoprotein2e-0962.8
NC_008740:443274:493318493318494058741Marinobacter aquaeolei VT8, complete genomeOmpW family protein6e-0960.8
NC_015138:201323:206054206054206800747Acidovorax avenae subsp. avenae ATCC 19860 chromosome, completeOmpW family protein4e-0858.2
NC_008752:166877:169644169644170411768Acidovorax avenae subsp. citrulli AAC00-1, complete genomeOmpW family protein4e-0858.2
NC_012633:98000:100212100212100946735Rickettsia africae ESF-5, complete genomeOmpW family outer-membrane protein5e-0651.2