Pre_GI: BLASTP Hits

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Query: NC_007384:1320287:1335299 Shigella sonnei Ss046, complete genome

Start: 1335299, End: 1335487, Length: 189

Host Lineage: Shigella sonnei; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain is an isolate from an epidemic in China in the 1950s. A leading cause of dysentery. This genus is named for the Japanese scientist (Shiga) who first discovered these organisms in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. These organisms are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, causing over 160 million cases of infection and 1 million deaths yearly worldwide. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. This extremely virulent organisms that can cause an active infection after a very low exposure. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism is the leading cause of dysentery in industrialized countries. The disease is usually less severe than other types of Shigella, causing mild diarrhea and dehydration.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016822:1304398:131891713189171319090174Shigella sonnei 53G, complete genomehypothetical protein4e-28123
NC_007613:1038000:103950510395051039708204Shigella boydii Sb227, complete genomeunknown protein encoded within prophage4e-22103
NC_011601:1269500:1288980128898012908301851Escherichia coli O127:H6 str. E2348/69 chromosome, complete genomehypothetical protein5e-1993.2
NC_013008:3525428:3543237354323735450901854Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein1e-1891.7
NC_011353:3573641:3588360358836035902131854Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein1e-1891.7
NC_002695:3468873:3484252348425234861051854Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-1891.7
NC_002655:3538656:3552256355225635534281173Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded by prophage CP-933Y2e-1890.9
NC_002695:1929215:1941996194199619438491854Escherichia coli O157:H7 str. Sakai, complete genomehypothetical protein1e-1788.2
NC_010658:1933605:1953573195357319555341962Shigella boydii CDC 3083-94, complete genome2e-1787.8
NC_002655:2142587:2143317214331721451671851Escherichia coli O157:H7 EDL933, complete genomeunknown protein encoded within prophage CP-933R6e-1786.3
NC_011748:1408280:1426724142672414285801857Escherichia coli 55989, complete genomehypothetical protein6e-1786.3
CU928145:1408280:1426724142672414285801857Escherichia coli 55989 chromosome, complete genomeconserved hypothetical protein6e-1786.3
NC_013361:1754346:1756560175656017584131854Escherichia coli O26:H11 str. 11368 chromosome, complete genomehypothetical protein7e-1785.9
NC_013008:2910567:2916512291651229184581947Escherichia coli O157:H7 str. TW14359 chromosome, complete genomehypothetical protein4e-1063.5
NC_011353:2957962:2961641296164129635871947Escherichia coli O157:H7 str. EC4115 chromosome, complete genomehypothetical protein4e-1063.5
NC_013364:1596278:1617129161712916190751947Escherichia coli O111:H- str. 11128, complete genomehypothetical protein4e-1063.5