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Query: NC_004631:1623511:1626948 Salmonella enterica subsp. enterica serovar Typhi Ty2, complete

Start: 1626948, End: 1627202, Length: 255

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This pathogenic strain of Salmonella typhi was isolated in the early 1970s. It contains no multidrug resistance plasmids and has been used for vaccine development. This serovar is a human-specific organism that causes the life-threatening illness Typhoid fever which is acquired by coming into contact with contaminated food or water. Annually, 17 million people are infected, with 600,000 fatalities, mostly in developing countries. It contains multiple fimbrial operons that may be used to create extracellular appendages for attachment and entry into host intestinal epithelial cells. Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_006905:1766000:176944517694451769831387Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein8e-42168
NC_011080:1750000:175263417526341752888255Salmonella enterica subsp. enterica serovar Newport str. SL254,putative inner membrane protein2e-41167
NC_011149:1429523:144659714465971446851255Salmonella enterica subsp. enterica serovar Agona str. SL483,putative inner membrane protein2e-41167
NC_003198:1336894:135398013539801354234255Salmonella enterica subsp. enterica serovar Typhi str. CT18,hypothetical protein2e-41167
NC_006511:1273162:129023912902391290493255Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCChypothetical protein2e-41167
NC_003197:1753663:175627917562791756533255Salmonella typhimurium LT2, complete genomeputative inner membrane protein2e-41167
NC_011094:1726000:172945917294591729713255Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein2e-41167
NC_011147:1267005:128408212840821284336255Salmonella enterica subsp. enterica serovar Paratyphi A strhypothetical protein2e-41167
NC_016810:1709695:171313217131321713386255Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-41167
NC_016856:1763640:176625617662561766510255Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein2e-41167
NC_016857:1709695:171313217131321713386255Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74hypothetical protein2e-41167
NC_016860:1752000:175397017539701754224255Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein2e-41167
NC_016863:1711832:171444817144481714702255Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein2e-41167
NC_017046:1709578:171301517130151713269255Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein2e-41167
NC_015761:1630000:164861516486151648875261Salmonella bongori NCTC 12419, complete genomehypothetical protein2e-40164
NC_009792:1345500:136203513620351362295261Citrobacter koseri ATCC BAA-895, complete genomehypothetical protein2e-34144
NC_008258:1873805:187579918757991875966168Shigella flexneri 5 str. 8401, complete genomehypothetical protein2e-2097.4
NC_013850:3303500:331990933199093320172264Klebsiella variicola At-22 chromosome, complete genomeProtein of unknown function DUF25341e-1994.7
NC_014618:2788533:279109527910952791355261Enterobacter cloacae SCF1 chromosome, complete genomehypothetical protein4e-1993.6
NC_012214:1974500:200995220099522010218267Erwinia pyrifoliae Ep1/96, complete genomehypothetical protein YnaJ2e-1168.2