Pre_GI: BLASTP Hits

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Query: NC_004605:741000:742110 Vibrio parahaemolyticus RIMD 2210633 chromosome II, complete

Start: 742110, End: 744227, Length: 2118

Host Lineage: Vibrio parahaemolyticus; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: This is a clinical strain isolated in 1996 in Osaka, Japan. It contains a type III secretion system which may enable colonization and penetration of the host intestinal epithelial layer, and possibly lead to septicemia. The genome contains multipe chromosomal rearrangements as compared to Vibrio cholerae. The organism also produces a hemolysin (thermostable direct hemolysin - TDH) that is particular to Vibrio parahaemolyticus. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. This species causes food poisoning (gastroenteritis) in countries that have elevated levels of seafood consumption such as Japan.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_004460:1237129:1241731124173112441542424Vibrio vulnificus CMCP6 chromosome II, complete sequencehypothetical protein4e-161568
NC_005140:1820970:1825580182558018280152436Vibrio vulnificus YJ016 chromosome II, complete sequenceputative exoprotease Vcc2e-160566
NC_003888:6470909:6477438647743864800352598Streptomyces coelicolor A3(2), complete genomeprobable secreted protease1e-74281
NC_014815:4621552:4639058463905846416372580Micromonospora sp. L5 chromosome, complete genomemicrobial collagenase., xanthomonalisin2e-74280
NC_007435:2701242:2721850272185027236671818Burkholderia pseudomallei 1710b chromosome II, complete sequencesubfamily M9A unassigned peptidase2e-59231
NC_009075:937782:9576209576209596051986Burkholderia pseudomallei 668 chromosome II, complete sequencecollagenase3e-59230
NC_006351:881655:9023579023579042941938Burkholderia pseudomallei K96243 chromosome 2, complete sequencecollagenase3e-59230
NC_009078:862796:8834958834958854321938Burkholderia pseudomallei 1106a chromosome II, complete sequencecollagenase3e-59230
NC_009092:1935281:1935281193528119381872907Shewanella loihica PV-4, complete genomeMicrobial collagenase4e-58226
NC_009092:3239500:324206732420673242948882Shewanella loihica PV-4, complete genomeMicrobial collagenase4e-45183
NC_015424:525039:5261745261745289332760Aeromonas veronii B565 chromosome, complete genomeCollagenase family9e-41169
NC_008570:546736:5479285479285506752748Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genomecollagenase family1e-40168
NC_009348:4011160:4012276401227640150232748Aeromonas salmonicida subsp. salmonicida A449, complete genomecollagenase5e-40166