Pre_GI: BLASTP Hits

Some Help

Query: NC_004578:895019:906604 Pseudomonas syringae pv. tomato str. DC3000, complete genome

Start: 906604, End: 907278, Length: 675

Host Lineage: Pseudomonas syringae group genomosp. 3; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria

General Information: While pathogenic on Arabidopsis thaliana, it is mainly characterized as causing bacterial speck disease on tomato plants, which has a large economic impact. This organism is mainly endophytic and is a poor colonizes of plant surfaces but can multiply within the host. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. This species includes many plant pathogens of important crops, which makes it a model organism in plant pathology. Its natural environment is on the surface of plant leaves and it can withstand various stressful conditions, like rain, wind, UV radiation and drought. It can colonize plants in a non-pathogenic state and can rapidly take advantage of changing environmental conditions to induce disease in susceptible plants by shifting gene expression patterns.




Search Results with any or all of these Fields

Host Accession, e.g. NC_0123..Host Description, e.g. Clostri...
Host Lineage, e.g. archae, Proteo, Firmi...
Host Information, e.g. soil, Thermo, Russia



SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_005773:4282840:431022143102214310874654Pseudomonas syringae pv. phaseolicola 1448A, complete genomeRibD C-terminal domain8e-119426
NC_015185:592598:610252610252610914663Desulfurobacterium thermolithotrophum DSM 11699 chromosome,2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine 1-reductase5e-38157
NC_012438:50845:709527095271617666Sulfurihydrogenibium azorense Az-Fu1 chromosome, complete genomediaminohydroxyphosphoribosylaminopyrimidine reductase1e-31136
NC_013156:573037:594288594288594947660Methanocaldococcus fervens AG86, complete genome2, 5-diamino-6-hydroxy-4-(5-phosphoribosylamino)pyrimidine 1-reductase4e-24111
NC_015958:11511:2457424574256561083Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genomeriboflavin biosynthesis protein RibD2e-21102
NC_007498:1666242:1690093169009316912081116Pelobacter carbinolicus DSM 2380, complete genomeriboflavin biosynthesis protein RibD4e-2098.2
NC_014374:1072218:114209511420951142742648Acidilobus saccharovorans 345-15 chromosome, complete genomePyrimidine nucleotide reductase3e-1995.1
NC_014002:1469653:148842014884201489100681Methanohalophilus mahii DSM 5219 chromosome, complete genome2, 5-diamino-6-(5-phosphoribosylamino)pyrimidin-4(3H)-one reductase6e-1994
NC_015555:4478:2168721687227691083Thermoanaerobacterium xylanolyticum LX-11 chromosome, completeriboflavin biosynthesis protein RibD7e-1994
NC_009633:1058000:1065408106540810665081101Alkaliphilus metalliredigens QYMF chromosome, complete genomeriboflavin biosynthesis protein RibD2e-1892.4
NC_014828:637523:6635106635106646131104Ethanoligenens harbinense YUAN-3 chromosome, complete genomeriboflavin biosynthesis protein RibD1e-1789.7
NC_014410:8694:2175521755228251071Thermoanaerobacterium thermosaccharolyticum DSM 571 chromosome,riboflavin biosynthesis protein RibD2e-1789.4
NC_019970:8938:2198121981230511071Thermoanaerobacterium thermosaccharolyticum M0795, complete genomeriboflavin biosynthesis protein RibD4e-1788.2
NC_015320:790137:796823796823797503681Archaeoglobus veneficus SNP6 chromosome, complete genome2,5-diamino-6-hydroxy-4-(5-phosphoribosylamino) pyrimidine1-reductase3e-1685.5
NC_014393:3494863:3494863349486334959571095Clostridium cellulovorans 743B chromosome, complete genomeriboflavin biosynthesis protein RibD3e-1685.1
NC_004193:375416:4495624495624506651104Oceanobacillus iheyensis HTE831, complete genomeriboflavin specific deaminase2e-1582.4
NC_010718:128423:1455661455661467081143Natranaerobius thermophilus JW/NM-WN-LF, complete genomeriboflavin biosynthesis protein RibD1e-1480.1
NC_014657:473479:4930704930704941851116Caldicellulosiruptor owensensis OL chromosome, complete genomeriboflavin biosynthesis protein ribd3e-1479
NC_011027:760221:7607577607577618721116Chlorobaculum parvum NCIB 8327, complete genomeriboflavin biosynthesis protein RibD2e-1375.9
NC_018604:233769:2426132426132437101098Brachyspira pilosicoli WesB complete genomeriboflavin biosynthesis protein RibD2e-1375.9
NC_007651:1726472:1741844174184417429801137Burkholderia thailandensis E264 chromosome I, complete sequenceriboflavin biosynthesis protein RibD3e-1375.5
NC_018607:2578433:2585780258578025868771098Brachyspira pilosicoli B2904 chromosome, complete genomeriboflavin biosynthesis protein RibD4e-1375.1
NC_014330:1541874:1551073155107315521701098Brachyspira pilosicoli 95/1000 chromosome, complete genomeriboflavin biosynthesis protein RibD5e-1374.7
NC_016593:2370000:2373364237336423745061143Geobacillus thermoleovorans CCB_US3_UF5 chromosome, completeriboflavin biosynthesis protein RibD7e-1373.9
NC_008942:915871:934754934754935431678Methanocorpusculum labreanum Z, complete genomehypothetical protein2e-1272.4
NC_016148:951446:9544599544599555921134Thermovirga lienii DSM 17291 chromosome, complete genomediaminohydroxyphosphoribosylaminopyrimidine deaminase4e-1271.6
NC_008312:2511500:2526786252678625279101125Trichodesmium erythraeum IMS101, complete genomeriboflavin biosynthesis protein RibD7e-1270.9
NC_007510:973828:9889559889559900761122Burkholderia sp. 383 chromosome 1, complete sequenceRiboflavin biosynthesis protein RibD/Riboflavin-specific deaminase2e-1066.2
NC_018870:1417851:1425375142537514265231149Thermacetogenium phaeum DSM 12270 chromosome, complete genomeriboflavin biosynthesis protein RibD2e-1065.5
NC_007912:4396972:4398792439879243998891098Saccharophagus degradans 2-40, complete genomeDiaminohydroxyphosphoribosylaminopyrimidine deaminase., 5-amino-6-(5-phosphoribosylamino)uracil reductase4e-1064.7
NC_014311:2733897:2753254275325427543661113Ralstonia solanacearum PSI07 chromosome, complete genomebifunctional protein: diaminohydroxyphosphoribosylaminopyrimidine deaminase (N-terminal); 5-amino-6-(5-phosphoribosylamino) uracil reductase7e-1063.9
NC_008752:3902637:3928561392856139296941134Acidovorax avenae subsp. citrulli AAC00-1, complete genomeriboflavin biosynthesis protein RibD1e-0963.5
NC_013446:1173377:1178152117815211792611110Comamonas testosteroni CNB-2, complete genomeriboflavin biosynthesis protein RibD2e-0962.8
NC_014532:3036109:3043765304376530449191155Halomonas elongata DSM 2581, complete genomeriboflavin biosynthesis protein RibD2e-0962.4
UCMB5137:1834999:1835657183565718367481092Bacillus atrophaeus UCMB-5137BATR1942_09520; fused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase; (location [1891303:183e-0962
NC_015563:1595500:1601025160102516021131089Delftia sp. Cs1-4 chromosome, complete genomeriboflavin biosynthesis protein RibD4e-0961.6
NC_012856:737170:7414027414027425141113Ralstonia pickettii 12D chromosome 1, complete genomeriboflavin biosynthesis protein RibD4e-0961.6
NC_010729:265791:287800287800288792993Porphyromonas gingivalis ATCC 33277, complete genomeputative riboflavin biosynthesis protein5e-0961.2
NC_015571:440605:462682462682463674993Porphyromonas gingivalis TDC60, complete genomeriboflavin biosynthesis protein RibD6e-0961.2
NC_010682:701912:7049167049167060281113Ralstonia pickettii 12J chromosome 1, complete sequenceriboflavin biosynthesis protein RibD6e-0960.8
NC_002950:155873:177951177951178943993Porphyromonas gingivalis W83, complete genomeriboflavin biosynthesis protein RibD6e-0960.8
NC_014614:478578:4824884824884836361149Clostridium sticklandii, complete genomefused diaminohydroxyphosphoribosylaminopyrimidine deaminase; 5-amino-6-(5-phosphoribosylamino) uracil reductase9e-0960.5
NC_009848:775000:7826457826457837301086Bacillus pumilus SAFR-032, complete genomebifunctional 5-amino-6-(5-phosphoribosylamino)uracil reductase/diaminohydroxyphosphoribosylaminopyrimidine deaminase8e-0960.5
NC_007677:1872459:1878759187875918801261368Salinibacter ruber DSM 13855, complete genomeriboflavin-specific deaminase/GTP cyclohydrolase II2e-0859.7
NC_010002:5752363:5765221576522157663301110Delftia acidovorans SPH-1, complete genomeriboflavin biosynthesis protein RibD3e-0858.9
NC_015873:1901939:1919263191926319203991137Megasphaera elsdenii DSM 20460, complete genomeriboflavin biosynthesis protein RibD4e-0858.2
NC_014976:403919:4073104073104083951086Bacillus subtilis BSn5 chromosome, complete genomebifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino) uracil reductase5e-0858.2
NC_017195:2273216:2275582227558222766671086Bacillus subtilis subsp. subtilis str. RO-NN-1 chromosome, completeriboflavin biosynthesis protein RibD5e-0858.2
NC_012721:770651:7734307734307745841155Burkholderia glumae BGR1 chromosome 2, complete genomePutative deaminase6e-0857.8
NC_004061:498483:508664508664509317654Buchnera aphidicola str. Sg (Schizaphis graminum), complete genomeriboflavin biosynthesis protein RibD9e-0857
NC_008340:420126:4201264201264212351110Alkalilimnicola ehrlichei MLHE-1, complete genomeriboflavin biosynthesis protein RibD1e-0757
NC_009953:2727669:2753186275318627544241239Salinispora arenicola CNS-205 chromosome, complete genomedeaminase-reductase domain-containing protein4e-0755.1
NC_008781:3056407:3070810307081030719221113Polaromonas naphthalenivorans CJ2, complete genomeriboflavin biosynthesis protein RibD4e-0755.1
NC_019902:2943719:2964369296436929655231155Thioalkalivibrio nitratireducens DSM 14787, complete genomeDiaminohydroxyphosphoribosylaminopyrimidine deaminase / 5-amino-6-(5-phosphoribosylamino)uracil reductase3e-0652.4