Pre_GI: BLASTP Hits

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Query: NC_004547:1873390:1880218 Erwinia carotovora subsp. atroseptica SCRI1043, complete genome

Start: 1880218, End: 1880427, Length: 210

Host Lineage: Pectobacterium atrosepticum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain (ATCC BAA-672) is a virulent blackleg isolated from the stem of a potato plant. Causative agent for blackleg and soft rot disease in potatoes. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Both Pectobacterium chrysanthemia and Pectobacterium carotovora cause soft-rot diseases of various plant hosts through degradation of the plant cell walls. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium. Pectobacterium atrosepticum is an environmentally widespread organism that causes blackleg and soft rot disease in potatoes. This organism produces pectolytic enzymes that destroy plant tissue and allow the bacteria to spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_013421:1819036:184086718408671841076210Pectobacterium wasabiae WPP163, complete genometranscriptional regulator, TraR/DksA family5e-28122
NC_012912:1701231:171445317144531714662210Dickeya zeae Ech1591, complete genometranscriptional regulator, TraR/DksA family8e-28122
NC_013592:2968500:299453229945322994735204Dickeya dadantii Ech586, complete genometranscriptional regulator, TraR/DksA family4e-27119
NC_017047:2079368:208374820837482083957210Rahnella aquatilis HX2 chromosome, complete genomephage/conjugal plasmid C-4 type zinc finger protein, TraR family9e-27118
NC_016818:1795576:183433418343341834543210Rahnella aquatilis CIP 78.65 = ATCC 33071 chromosome, completephage/conjugal plasmid C-4 type zinc finger protein, TraR family1e-25114
NC_011283:1811000:185230418523041852513210Klebsiella pneumoniae 342 chromosome, complete genomephage/conjugal plasmid C-4 type zinc finger protein, TraR family2e-25114
NC_005810:1794490:179449017944901794699210Yersinia pestis biovar Microtus str. 91001, complete genomeDnaK suppressor protein3e-23107
NC_008150:1420825:142082514208251421034210Yersinia pestis Antiqua, complete genomehypothetical protein3e-23107
NC_010634:1916000:191621119162111916420210Yersinia pseudotuberculosis PB1/+, complete genomeTraR/DksA family transcriptional regulator3e-23107
NC_004088:2640440:267884326788432679052210Yersinia pestis KIM, complete genomehypothetical protein3e-23107
NC_006155:1916426:191622719162271916436210Yersinia pseudotuberculosis IP 32953, complete genomehypothetical protein3e-23107
NC_009381:1362471:139824413982441398453210Yersinia pestis Pestoides F chromosome, complete genomehypothetical protein3e-23107
NC_014306:103545:110121110121110348228Erwinia billingiae Eb661, complete genomehypothetical protein4e-0856.6
NC_008800:1870596:188442018844201884644225Yersinia enterocolitica subsp. enterocolitica 8081 chromosome,hypothetical protein8e-0855.8
NC_020418:3022891:303850130385013038722222Morganella morganii subsp. morganii KT, complete genomehypothetical protein4e-0753.5
NC_012917:3565268:357993435799343580158225Pectobacterium carotovorum subsp. carotovorum PC1, complete genometranscriptional regulator, TraR/DksA family7e-0752.8
NC_013282:3389619:340304934030493403273225Cronobacter turicensis, complete genomeUncharacterized 8.5 kDa protein in gpA 5'region9e-0752.4
NC_020181:5182568:519321951932195193440222Enterobacter aerogenes EA1509E, complete genomeHypothetical Zinc-finger containing protein2e-0651.6
NC_021066:2226826:224913522491352249353219Raoultella ornithinolytica B6, complete genomephage/conjugal plasmid C-4 type zinc finger protein, TraR family3e-0650.4
NC_016845:1285435:128975112897511289966216Klebsiella pneumoniae subsp. pneumoniae HS11286 chromosome,phage/conjugal plasmid C-4 type zinc finger protein, TraR family5e-0649.7
NC_014837:3766426:378008137800813780308228Pantoea sp. At-9b chromosome, complete genomeTraR/DksA family transcriptional regulator7e-0649.3
NC_008750:3314309:332011733201173320320204Shewanella sp. W3-18-1, complete genometranscriptional regulator, TraR/DksA family9e-0648.9