Pre_GI: BLASTP Hits

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Query: NC_004337:3590323:3896423 Shigella flexneri 2a str. 301, complete genome

Start: 3896423, End: 3896770, Length: 348

Host Lineage: Shigella flexneri; Shigella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated in 1984 from a patient in Beijing, China. It is similar to pathogenic Escherichia coli except for the more numerous insertion sequences and contains a virulence plasmid (pCP301). Causes enteric disease. Shigella This genus is named for the Japanese scientist (Shiga) who discovered them in the 1890s. They are closely related to the Escherichia group, and may be considered the same species. are human-specific pathogens that are transmitted via contaminated food and water and are the leading causes of endemic bacillary dysentery, and over 1 million deaths worldwide are attributed to them. The bacteria infect the epithelial lining of the colon, causing acute inflammation by entering the host cell cytoplasm and spreading intercellularly. are extremely virulent organisms that require very few cells in order to cause disease. Both the type III secretion system, which delivers effector molecules into the host cell, and some of the translocated effectors such as the invasion plasmid antigens (Ipas), are encoded on the plasmid. The bacterium produces a surface protein that localizes to one pole of the cell (IcsA) which binds to and promotes actin polymerization, resulting in movement of the bacterium through the cell cytoplasm, and eventually to neighboring cells, which results in inflammatory destruction of the mucosal lining. This organism, along with Shigella sonnei, is the major cause of shigellosis in industrialized countries and is responsible for endemic infections.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_017046:4025998:402687740268774027224348Salmonella enterica subsp. enterica serovar Typhimurium str. 798hypothetical protein1e-36151
NC_006905:3942753:394639139463913946738348Salmonella enterica subsp. enterica serovar Choleraesuis strputative inner membrane protein1e-36151
NC_011080:3976441:397732039773203977667348Salmonella enterica subsp. enterica serovar Newport str. SL254,inner membrane protein YidH1e-36151
NC_003197:4005857:400673640067364007083348Salmonella typhimurium LT2, complete genomeputative inner membrane protein1e-36151
NC_011149:3930358:393123739312373931584348Salmonella enterica subsp. enterica serovar Agona str. SL483,inner membrane protein YidH1e-36151
NC_011094:3887648:388852738885273888874348Salmonella enterica subsp. enterica serovar Schwarzengrund strhypothetical protein1e-36151
NC_011205:4038884:403976340397634040110348Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853hypothetical protein1e-36151
NC_011274:3799696:381714838171483817495348Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91hypothetical protein1e-36151
NC_011294:3880500:388139338813933881740348Salmonella enterica subsp. enterica serovar Enteritidis strhypothetical protein1e-36151
NC_016810:4027170:402804940280494028396348Salmonella enterica subsp. enterica serovar Typhimurium strhypothetical protein1e-36151
NC_016831:3779611:379797937979793798326348Salmonella enterica subsp. enterica serovar Gallinarum/pullorumhypothetical protein1e-36151
NC_016856:4019549:402042840204284020775348Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sputative inner membrane protein1e-36151
NC_016857:4025767:402805040280504028397348Salmonella enterica subsp. enterica serovar Typhimurium str. ST4/74putative inner membrane protein1e-36151
NC_016860:4110968:411184741118474112194348Salmonella enterica subsp. enterica serovar Typhimurium strinner membrane protein YidH1e-36151
NC_016863:3967156:396803539680353968382348Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1putative inner membrane protein1e-36151
NC_011083:4020000:402094540209454021292348Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,inner membrane protein YidH4e-36149
NC_006511:3794017:379489637948963795243348Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCputative inner membrane protein4e-36149
NC_011147:3789696:379057537905753790922348Salmonella enterica subsp. enterica serovar Paratyphi A strinner membrane protein4e-36149
NC_003198:3824187:384164538416453841992348Salmonella enterica subsp. enterica serovar Typhi str. CT18,3e-35146
NC_012522:2031786:203435520343552034720366Rhodococcus opacus B4, complete genomehypothetical membrane protein5e-1063.2
NC_008268:2313583:231563023156302315995366Rhodococcus sp. RHA1, complete genomepossible inner membrane protein6e-1062.8
NC_013446:2164974:218808921880892188445357Comamonas testosteroni CNB-2, complete genomehypothetical protein7e-1062.8
NC_014165:2533040:255997925599792560314336Thermobispora bispora DSM 43833 chromosome, complete genomehypothetical protein3e-0857
NC_016832:3798475:381607938160793816279201Salmonella enterica subsp. enterica serovar Typhi str. P-stx-12,Inner membrane protein yidH1e-0755.1