Pre_GI: BLASTP Hits

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Query: NC_003308:1:16372 Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequence

Start: 16372, End: 18639, Length: 2268

Host Lineage: Agrobacterium tumefaciens; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: Gram-negative soil bacterium. This is the most widely studied species in the genus. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003065:27163:4977549775520422268Agrobacterium tumefaciens str. C58 plasmid Ti, complete sequencetryptophan monooxygenase01568
NC_011982:206784:2153462153462175172172Agrobacterium vitis S4 plasmid pTiS4, complete sequencetryptophan 2-monooxygenase0679
NC_010627:532407:5405945405945422821689Burkholderia phymatum STM815 plasmid pBPHY02, complete sequenceamine oxidase7e-166584
NC_014120:88679:98514985141002021689Burkholderia sp. CCGE1002 plasmid pBC201, complete sequenceamine oxidase1e-165583
NC_007005:1705406:1725786172578617274591674Pseudomonas syringae pv. syringae B728a, complete genomeAmine oxidase1e-164580
NC_009255:1250939:1250939125093912526361698Burkholderia vietnamiensis G4 chromosome 2, complete sequenceamine oxidase2e-143509
NC_015733:443122:4463894463894480711683Pseudomonas putida S16 chromosome, complete genomeamine oxidase2e-51204
NC_009512:469000:4723704723704740521683Pseudomonas putida F1, complete genomeamine oxidase1e-51204
NC_015379:6226661:6254940625494062566221683Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome,putative oxidoreductase7e-51202
NC_014158:1479313:1480790148079014824871698Tsukamurella paurometabola DSM 20162 chromosome, complete genomeamine oxidase3e-49197
NC_010501:1286971:1302023130202313039571935Pseudomonas putida W619, complete genomeamine oxidase2e-1378.6
NC_010674:2417199:2418257241825724199751719Clostridium botulinum B str. Eklund 17B, complete genomeputative flavin containing amine oxidoreductase2e-0758.5