Pre_GI: BLASTP Hits

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Query: NC_003198:3042000:3059944 Salmonella enterica subsp. enterica serovar Typhi str. CT18,

Start: 3059944, End: 3060017, Length: 74

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
AP010958:3474077:35065993506599350667274Escherichia coli O103:H2 str. 12009 DNA, complete genometRNA-Gly4e-0650.1
NC_011748:3196173:32231253223125322319874Escherichia coli 55989, complete genometRNA-Gly4e-0650.1
CP002516:903241:90997090997091004374Escherichia coli KO11, complete genometRNA-Gly4e-0650.1
NC_000913:2975659:29970062997006299707974Escherichia coli K12, complete genometRNA-Gly4e-0650.1
NC_010468:906957:91368691368691375974Escherichia coli ATCC 8739, complete genometRNA-Gly4e-0650.1
CU928145:3196173:32231253223125322319874Escherichia coli 55989 chromosome, complete genometRNA-Gly4e-0650.1
NC_010473:3069529:30908763090876309094974Escherichia coli str. K-12 substr. DH10B, complete genometRNA-Gly4e-0650.1
NC_011751:3285646:33215453321545332161874Escherichia coli UMN026 chromosome, complete genometRNA-Gly4e-0650.1
NC_002695:3702344:37373143737314373738774Escherichia coli O157:H7 str. Sakai, complete genometRNA-Gly4e-0650.1
CP002185:3167738:31960333196033319610674Escherichia coli W, complete genometRNA-Gly4e-0650.1
CU928160:3030324:30572403057240305731374Escherichia coli IAI1 chromosome, complete genometRNA-Gly4e-0650.1
NC_011750:3407500:34262723426272342634574Escherichia coli IAI39 chromosome, complete genometRNA-Gly4e-0650.1
NC_002655:3769643:38046193804619380469274Escherichia coli O157:H7 EDL933, complete genometRNA-Gly4e-0650.1