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Query: NC_003197:2894344:2912623 Salmonella typhimurium LT2, complete genome

Start: 2912623, End: 2913162, Length: 540

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Causes enteric infections. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis, from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.

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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_016863:2844883:288111128811112881650540Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1phase-1 flagellin repressor1e-103374
NC_016856:2896630:293285829328582933397540Salmonella enterica subsp. enterica serovar Typhimurium str. 14028Sphase-1 flagellin repressor1e-103374
NC_006905:2857699:286596728659672866506540Salmonella enterica subsp. enterica serovar Choleraesuis strFlagellar synthesis: repressor of fliC2e-102370
NC_011147:2713937:272398227239822724521540Salmonella enterica subsp. enterica serovar Paratyphi A strFlagellar synthesis: repressor of fliC1e-101368
NC_006511:2718401:272844627284462728985540Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCCFlagellar synthesis: repressor of fliC1e-101368
NC_016860:2917910:293618929361892936719531Salmonella enterica subsp. enterica serovar Typhimurium strphase-1 flagellin repressor2e-101367
NC_011094:2791719:281974228197422820281540Salmonella enterica subsp. enterica serovar Schwarzengrund strrepressor of phase 1 flagellin gene3e-99360
NC_011083:2847318:288712928871292887599471Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,repressor of phase 1 flagellin gene1e-88325
NC_010102:2862178:287676628767662877236471Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,hypothetical protein6e-86316
NC_011080:2870428:288926228892622889732471Salmonella enterica subsp. enterica serovar Newport str. SL254,repressor of phase 1 flagellin gene3e-85313
NC_016838:85487:854878548786017531Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS1,putative transcriptional regulator2e-22105