Pre_GI: BLASTP Hits

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Query: NC_003064:22535:38329 Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence

Start: 38329, End: 38751, Length: 423

Host Lineage: Agrobacterium fabrum; Agrobacterium; Rhizobiaceae; Rhizobiales; Proteobacteria; Bacteria

General Information: This strain is a biovar 1 nopaline-producing strain originally isolated from a cherry tree tumor. Strains of Agrobacterium are classified in three biovars based on their utilisation of different carbohydrates and other biochemical tests. The differences between biovars are determined by genes on the single circle of chromosomal DNA. Biovar differences are not particularly relevant to the pathogenicity of A. tumefaciens, except in one respect: biovar 3 is found worldwide as the pathogen of gravevines. This species causes crown gall disease of a wide range of dicotyledonous (broad-leaved) plants, especially members of the rose family such as apple, pear, peach, cherry, almond, raspberry and roses. Because of the way that it infects other organisms, this bacterium has been used as a tool in plant breeding. Any desired genes, such as insecticidal toxin genes or herbicide-resistance genes, can be engineered into the bacterial DNA, and then inserted into the plant genome. This process shortens the conventional plant breeding process, and allows entirely new (non-plant) genes to be engineered into crops.




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SubjectStartEndLengthSubject Host DescriptionCDS descriptionE-valueBit score
NC_003306:22228:380223802238444423Agrobacterium tumefaciens str. C58 plasmid AT, complete sequence2e-75280
NC_008573:195317:2063362063362092302895Shewanella sp. ANA-3 plasmid 1, complete sequencetransposase Tn3 family protein5e-2096.3
NC_007005:3199820:3236917323691732398022886Pseudomonas syringae pv. syringae B728a, complete genomeTransposase Tn36e-2096.3
NC_010545:1781393:1789345178934517907631419Corynebacterium urealyticum DSM 7109, complete genometransposase of Tn5393-like transposon, N-terminal fragment9e-2095.5
NC_009431:40917:6320863208644101203Rhodobacter sphaeroides ATCC 17025 plasmid pRSPA03, completehypothetical protein2e-1994
NC_009349:78000:97855978551008212967Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, completeTnpA transposase4e-1993.6
NC_016860:4055117:4068587406858740715532967Salmonella enterica subsp. enterica serovar Typhimurium strTn3 family transposase4e-1993.6
NC_017328:1075535:1113383111338311163492967Shigella flexneri 2002017 chromosome, complete genomeTnpA transposase4e-1993.6
NC_017387:247462:2619672619672630521086Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomehypothetical protein3e-1993.6
NC_017387:247462:2726392726392737241086Acinetobacter baumannii TCDC-AB0715 chromosome, complete genomehypothetical protein3e-1993.6
NC_016591:202342:2023422023422051012760Burkholderia sp. YI23 plasmid byi_2p, complete sequencetransposase9e-1992
NC_010801:421906:4219064219064249533048Burkholderia multivorans ATCC 17616 chromosome 3, completeISBmu14 transposase2e-1890.9
NC_011662:2402408:2421365242136524243312967Thauera sp. MZ1T, complete genometransposase Tn3 family protein3e-1890.5
NC_018080:3088866:3092391309239130953572967Pseudomonas aeruginosa DK2 chromosome, complete genomeTn4656/Tn4657/Tn4658 transposase3e-1890.5
NC_014107:171170:1738131738131758642052Enterobacter cloacae subsp. cloacae ATCC 13047 plasmid pECL_A,Tn3-family transposase3e-1890.5
NC_018080:3055358:3066793306679330697592967Pseudomonas aeruginosa DK2 chromosome, complete genometransposase Tn3 family protein3e-1890.5
NC_004757:905417:9113769113769143452970Nitrosomonas europaea ATCC 19718, complete genomeTransposase Tn3 family2e-1787.8
NC_016846:24500:2621926219291852967Klebsiella pneumoniae subsp. pneumoniae HS11286 plasmid pKPHS2,transposase for transposon Tn17212e-1787.4
NC_009656:5475540:5498875549887555018412967Pseudomonas aeruginosa PA7 chromosome, complete genometransposase2e-1787.4
NC_003384:109036:1229251229251258972973Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmidtransposase6e-1786.3
NC_009140:121107:1211071211071240792973Salmonella enterica enterica sv Newport str. SL254, completetransposase TnpA for transposon Tn216e-1786.3
NC_008344:1364142:1374505137450513774772973Nitrosomonas eutropha C91, complete genometransposase Tn3 family protein6e-1786.3
NC_008341:29038:3686836868398402973Nitrosomonas eutropha C91 plasmid1, complete sequencetransposase Tn3 family protein6e-1786.3
NC_009838:81913:9162391623945952973Escherichia coli APEC O1 plasmid pAPEC-O1-R, complete sequencetransposase6e-1786.3
NC_016624:112919:1136371136371165942958Azospirillum lipoferum 4B plasmid AZO_p5, complete sequenceTransposase of ISAli20, Tn3 family6e-1785.9
NC_015733:5909821:5925534592553459285002967Pseudomonas putida S16 chromosome, complete genomeTn501 transposition transposase7e-1785.9
NC_004349:3938:1294512945159112967Shewanella oneidensis MR-1 plasmid pMR-1, complete sequenceISSod9, transposase9e-1785.5
NC_010002:2933909:2948215294821529511872973Delftia acidovorans SPH-1, complete genometransposase Tn3 family protein2e-1684.3
NC_008740:1414926:1414926141492614178982973Marinobacter aquaeolei VT8, complete genometransposase Tn3 family protein3e-1684
NC_008345:4107847:4120241412024141218211581Shewanella frigidimarina NCIMB 400, complete genometransposase Tn3 family protein3e-1683.6
NC_008609:1976403:2061652206165220646242973Pelobacter propionicus DSM 2379, complete genometransposase Tn3 family protein3e-1683.6
NC_006625:63342:7831778317812862970Klebsiella pneumoniae NTUH-K2044 plasmid pK2044, complete sequencetransposase Tn3 family protein3e-1683.6
NC_008786:1553833:156713015671301567894765Verminephrobacter eiseniae EF01-2, complete genome5e-1683.2
NC_011667:1:72467246102122967Thauera sp. MZ1T plasmid pTha01, complete sequencetransposase Tn3 family protein8e-1579
NC_017190:3879148:3886424388642438893902967Bacillus amyloliquefaciens LL3 chromosome, complete genometransposase for transposon Tn15462e-1477.8
NC_017190:2002718:2018236201823620212022967Bacillus amyloliquefaciens LL3 chromosome, complete genometransposase for transposon Tn15462e-1477.8
NC_014551:2057971:2073474207347420764402967Bacillus amyloliquefaciens DSM 7, complete genomeTransposase for transposon Tn15462e-1477.8
NC_014551:3864127:3871403387140338743692967Bacillus amyloliquefaciens DSM 7, complete genomeTransposase for transposon Tn15462e-1477.8
NC_020409:621792:6594306594306623542925Desulfovibrio piezophilus str. nov C1TLV30 chromosome, completetransposase3e-1373.6
NC_011973:70764:7076470764737122949Bacillus cereus Q1 plasmid pBc239, complete sequenceTnpA7e-1372.8
NC_017202:1:1620316203191662964Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT127,Transposase for transposon Tn15464e-1166.6
NC_017202:1:1014101439772964Bacillus thuringiensis serovar chinensis CT-43 plasmid pCT127,Transposase for transposon Tn15464e-1166.6
NC_011777:100631:1202571202571232202964Bacillus cereus AH820 plasmid pAH820_272, complete sequencetransposase2e-1064.3
NC_014841:248487:2641502641502672453096Pantoea sp. At-9b plasmid pPAT9B04, complete sequencetransposase Tn3 family protein1e-0961.6
NC_010693:1:1560415604183062703Erwinia tasmaniensis plasmid pET46, complete sequenceTransposase for transposon Tn25016e-0959.7
NC_009052:2512373:2516578251657825195622985Shewanella baltica OS155, complete genometransposase Tn3 family protein1e-0858.9
NC_008025:1799106:1809837180983718128573021Deinococcus geothermalis DSM 11300, complete genometransposase Tn32e-0754.7
NC_014170:57954:7095870958739362979Xenorhabdus nematophila ATCC 19061 plasmid XNC1_p, completetransposase5e-0753.1
NC_018000:1207231:120956112095611209749189Sinorhizobium fredii USDA 257 chromosome, complete genomehypothetical protein4e-0650.4
NC_017162:1228723:125100612510061251530525Acinetobacter baumannii 1656-2 chromosome, complete genomeTransposase for transposon Tn36e-0649.3
NC_016809:112410:1199061199061230403135Haemophilus influenzae 10810, complete genometransposase7e-0649.3
NC_011586:268927:2988362988363018413006Acinetobacter baumannii AB0057 chromosome, complete genometransposase Tn38e-0649.3