Query: NC_012917:4646491 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome
Start: 4646491, End: 4667665, Length: 21175
Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_004547:138500 | 138500 | 159068 | 20569 | Erwinia carotovora subsp. atroseptica SCRI1043, complete genome | 0 | 5691 | BLASTN svg | BLASTP svg |
NC_020064:4751097* | 4751097 | 4776599 | 25503 | Serratia marcescens FGI94, complete genome | 3e-163 | 583 | BLASTN svg | BLASTP svg |
NC_014500:4691915 | 4691915 | 4720595 | 28681 | Dickeya dadantii 3937 chromosome, complete genome | 3e-154 | 553 | BLASTN svg | BLASTP svg |
NC_012880:135508 | 135508 | 160528 | 25021 | Dickeya dadantii Ech703, complete genome | 4e-113 | 416 | BLASTN svg | BLASTP svg |
NC_013961:73037* | 73037 | 107491 | 34455 | Erwinia amylovora, complete genome | 5e-106 | 392 | BLASTN svg | BLASTP svg |
NC_009792:4658909 | 4658909 | 4682861 | 23953 | Citrobacter koseri ATCC BAA-895, complete genome | 1e-103 | 385 | BLASTN svg | BLASTP svg |
NC_003197:3902500* | 3902500 | 3928384 | 25885 | Salmonella typhimurium LT2, complete genome | 5e-100 | 373 | BLASTN svg | BLASTP svg |
NC_013850:109500* | 109500 | 132099 | 22600 | Klebsiella variicola At-22 chromosome, complete genome | 8e-99 | 369 | BLASTN svg | BLASTP svg |
NC_009648:4359875* | 4359875 | 4381253 | 21379 | Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome | 7e-87 | 329 | BLASTN svg | BLASTP svg |
NC_010694:63654* | 63654 | 86099 | 22446 | Erwinia tasmaniensis, complete genome | 4e-73 | 283 | BLASTN svg | BLASTP svg |
NC_004337:3590323* | 3590323 | 3952993 | 362671 | Shigella flexneri 2a str. 301, complete genome | 9e-68 | 266 | BLASTN svg | BLASTP svg |
NC_013592:4511478 | 4511478 | 4539867 | 28390 | Dickeya dadantii Ech586, complete genome | 7e-47 | 196 | BLASTN svg | BLASTP svg |
NC_014121:1101093* | 1101093 | 1134357 | 33265 | Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete | 1e-39 | 172 | BLASTN svg | BLASTP svg |
NC_014562:469154* | 469154 | 493040 | 23887 | Pantoea vagans C9-1 chromosome, complete genome | 9e-37 | 163 | BLASTN svg | BLASTP svg |
NC_013716:1138441* | 1138441 | 1168415 | 29975 | Citrobacter rodentium ICC168, complete genome | 4e-36 | 161 | BLASTN svg | BLASTP svg |
NC_015567:2125415* | 2125415 | 2148099 | 22685 | Serratia sp. AS9 chromosome, complete genome | 9e-34 | 153 | BLASTN svg | BLASTP svg |
NC_015566:2125403* | 2125403 | 2148099 | 22697 | Serratia sp. AS12 chromosome, complete genome | 9e-34 | 153 | BLASTN svg | BLASTP svg |
NC_008027:775896 | 775896 | 802599 | 26704 | Pseudomonas entomophila L48, complete genome | 1e-26 | 129 | BLASTN svg | BLASTP svg |
NC_012660:4734363* | 4734363 | 4755258 | 20896 | Pseudomonas fluorescens SBW25 chromosome, complete genome | 1e-26 | 129 | BLASTN svg | BLASTP svg |
NC_012917:4328463 | 4328463 | 4352099 | 23637 | Pectobacterium carotovorum subsp. carotovorum PC1, complete genome | 8e-25 | 123 | BLASTN svg | BLASTP svg |
NC_009832:2211154* | 2211154 | 2246190 | 35037 | Serratia proteamaculans 568, complete genome | 8e-22 | 113 | BLASTN svg | BLASTP svg |
NC_020064:1501441 | 1501441 | 1519843 | 18403 | Serratia marcescens FGI94, complete genome | 1e-20 | 109 | BLASTN svg | BLASTP svg |
NC_010501:734363 | 734363 | 769099 | 34737 | Pseudomonas putida W619, complete genome | 1e-20 | 109 | BLASTN svg | BLASTP svg |
NC_013456:212150 | 212150 | 234288 | 22139 | Vibrio sp. Ex25 chromosome 1, complete genome | 2e-19 | 105 | BLASTN svg | BLASTP svg |
NC_007606:3755155 | 3755155 | 3778343 | 23189 | Shigella dysenteriae Sd197, complete genome | 2e-16 | 95.6 | BLASTN svg | BLASTP svg |
NC_009832:1664238 | 1664238 | 1696232 | 31995 | Serratia proteamaculans 568, complete genome | 7e-16 | 93.7 | BLASTN svg | BLASTP svg |
NC_020211:1655826* | 1655826 | 1678705 | 22880 | Serratia marcescens WW4, complete genome | 7e-16 | 93.7 | BLASTN svg | BLASTP svg |
NC_008700:367949* | 367949 | 392647 | 24699 | Shewanella amazonensis SB2B, complete genome | 3e-15 | 91.7 | BLASTN svg | BLASTP svg |
NC_009997:415808 | 415808 | 434099 | 18292 | Shewanella baltica OS195, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_008322:373531 | 373531 | 392732 | 19202 | Shewanella sp. MR-7, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_007963:3574000 | 3574000 | 3596723 | 22724 | Chromohalobacter salexigens DSM 3043, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
NC_015563:334942 | 334942 | 353158 | 18217 | Delftia sp. Cs1-4 chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_014532:3967463* | 3967463 | 3993099 | 25637 | Halomonas elongata DSM 2581, complete genome | 6e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_015589:3556197 | 3556197 | 3576215 | 20019 | Desulfotomaculum ruminis DSM 2154 chromosome, complete genome | 1e-05 | 60 | BLASTN svg | BLASTP svg |