Pre_GI: BLASTN Hits

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Query: NC_012917:4646491 Pectobacterium carotovorum subsp. carotovorum PC1, complete genome

Start: 4646491, End: 4667665, Length: 21175

Host Lineage: Pectobacterium carotovorum; Pectobacterium; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: Temp: Mesophile; Habitat: Host. Pectobacterium carotovorum causes soft-rot diseases of various plant hosts through degradation of the plant cell walls. Formerly Erwinia, these organisms are plant-specific pathogens that invade the vascular systems of plants. Pectobacterium colonize the intercellular spaces of plant cells and deliver potent effector molecules (Avr - avirulence) through a type III secretion system (Hrp - hypersensitive response and pathogenicity). Avr proteins control host-bacterium interactions, including host range. Expression of the plant cell-wall-degrading enzymes is controlled through a quorum-sensing mechanism that quantifies the number of Pectobacterium bacteria through measurement of the concentration of small molecules (acyl homoserine lactones) produced by Pectobacterium.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_004547:13850013850015906820569Erwinia carotovora subsp. atroseptica SCRI1043, complete genome05691BLASTN svgBLASTP svg
NC_020064:4751097*4751097477659925503Serratia marcescens FGI94, complete genome3e-163583BLASTN svgBLASTP svg
NC_014500:46919154691915472059528681Dickeya dadantii 3937 chromosome, complete genome3e-154553BLASTN svgBLASTP svg
NC_012880:13550813550816052825021Dickeya dadantii Ech703, complete genome4e-113416BLASTN svgBLASTP svg
NC_013961:73037*7303710749134455Erwinia amylovora, complete genome5e-106392BLASTN svgBLASTP svg
NC_009792:46589094658909468286123953Citrobacter koseri ATCC BAA-895, complete genome1e-103385BLASTN svgBLASTP svg
NC_003197:3902500*3902500392838425885Salmonella typhimurium LT2, complete genome5e-100373BLASTN svgBLASTP svg
NC_013850:109500*10950013209922600Klebsiella variicola At-22 chromosome, complete genome8e-99369BLASTN svgBLASTP svg
NC_009648:4359875*4359875438125321379Klebsiella pneumoniae subsp. pneumoniae MGH 78578, complete genome7e-87329BLASTN svgBLASTP svg
NC_010694:63654*636548609922446Erwinia tasmaniensis, complete genome4e-73283BLASTN svgBLASTP svg
NC_004337:3590323*35903233952993362671Shigella flexneri 2a str. 301, complete genome9e-68266BLASTN svgBLASTP svg
NC_013592:45114784511478453986728390Dickeya dadantii Ech586, complete genome7e-47196BLASTN svgBLASTP svg
NC_014121:1101093*1101093113435733265Enterobacter cloacae subsp. cloacae ATCC 13047 chromosome, complete1e-39172BLASTN svgBLASTP svg
NC_014562:469154*46915449304023887Pantoea vagans C9-1 chromosome, complete genome9e-37163BLASTN svgBLASTP svg
NC_013716:1138441*1138441116841529975Citrobacter rodentium ICC168, complete genome4e-36161BLASTN svgBLASTP svg
NC_015567:2125415*2125415214809922685Serratia sp. AS9 chromosome, complete genome9e-34153BLASTN svgBLASTP svg
NC_015566:2125403*2125403214809922697Serratia sp. AS12 chromosome, complete genome9e-34153BLASTN svgBLASTP svg
NC_008027:77589677589680259926704Pseudomonas entomophila L48, complete genome1e-26129BLASTN svgBLASTP svg
NC_012660:4734363*4734363475525820896Pseudomonas fluorescens SBW25 chromosome, complete genome1e-26129BLASTN svgBLASTP svg
NC_012917:43284634328463435209923637Pectobacterium carotovorum subsp. carotovorum PC1, complete genome8e-25123BLASTN svgBLASTP svg
NC_009832:2211154*2211154224619035037Serratia proteamaculans 568, complete genome8e-22113BLASTN svgBLASTP svg
NC_020064:15014411501441151984318403Serratia marcescens FGI94, complete genome1e-20109BLASTN svgBLASTP svg
NC_010501:73436373436376909934737Pseudomonas putida W619, complete genome1e-20109BLASTN svgBLASTP svg
NC_013456:21215021215023428822139Vibrio sp. Ex25 chromosome 1, complete genome2e-19105BLASTN svgBLASTP svg
NC_007606:37551553755155377834323189Shigella dysenteriae Sd197, complete genome2e-1695.6BLASTN svgBLASTP svg
NC_009832:16642381664238169623231995Serratia proteamaculans 568, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_020211:1655826*1655826167870522880Serratia marcescens WW4, complete genome7e-1693.7BLASTN svgBLASTP svg
NC_008700:367949*36794939264724699Shewanella amazonensis SB2B, complete genome3e-1591.7BLASTN svgBLASTP svg
NC_009997:41580841580843409918292Shewanella baltica OS195, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008322:37353137353139273219202Shewanella sp. MR-7, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_007963:35740003574000359672322724Chromohalobacter salexigens DSM 3043, complete genome3e-0971.9BLASTN svgBLASTP svg
NC_015563:33494233494235315818217Delftia sp. Cs1-4 chromosome, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_014532:3967463*3967463399309925637Halomonas elongata DSM 2581, complete genome6e-0763.9BLASTN svgBLASTP svg
NC_015589:35561973556197357621520019Desulfotomaculum ruminis DSM 2154 chromosome, complete genome1e-0560BLASTN svgBLASTP svg