Query: NC_012668:3037345 Vibrio cholerae MJ-1236 chromosome 1, complete sequence
Start: 3037345, End: 3065178, Length: 27834
Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria
General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_011138:3182807* | 3182807 | 3211655 | 28849 | Alteromonas macleodii 'Deep ecotype', complete genome | 0 | 6181 | BLASTN svg | BLASTP svg |
NC_018679:2412000 | 2412000 | 2434722 | 22723 | Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, complete | 0 | 5779 | BLASTN svg | BLASTP svg |
NC_008345:4107847 | 4107847 | 4137958 | 30112 | Shewanella frigidimarina NCIMB 400, complete genome | 0 | 5620 | BLASTN svg | BLASTP svg |
NC_003384:157158 | 157158 | 184438 | 27281 | Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid | 0 | 5531 | BLASTN svg | BLASTP svg |
NC_010410:3606826 | 3606826 | 3695409 | 88584 | Acinetobacter baumannii AYE, complete genome | 0 | 4440 | BLASTN svg | BLASTP svg |
NC_010554:2646806 | 2646806 | 2726511 | 79706 | Proteus mirabilis HI4320, complete genome | 0 | 4171 | BLASTN svg | BLASTP svg |
NC_004741:2593012 | 2593012 | 2615576 | 22565 | Shigella flexneri 2a str. 2457T, complete genome | 0 | 3663 | BLASTN svg | BLASTP svg |
NC_010545:1781393* | 1781393 | 1807973 | 26581 | Corynebacterium urealyticum DSM 7109, complete genome | 0 | 3429 | BLASTN svg | BLASTP svg |
NC_011770:2804218 | 2804218 | 2828838 | 24621 | Pseudomonas aeruginosa LESB58, complete genome | 0 | 3354 | BLASTN svg | BLASTP svg |
NC_009651:19909 | 19909 | 43328 | 23420 | Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5, | 0 | 3198 | BLASTN svg | BLASTP svg |
NC_008750:1253354 | 1253354 | 1283210 | 29857 | Shewanella sp. W3-18-1, complete genome | 3e-179 | 636 | BLASTN svg | BLASTP svg |
NC_011751:4992500 | 4992500 | 5013387 | 20888 | Escherichia coli UMN026 chromosome, complete genome | 1e-156 | 561 | BLASTN svg | BLASTP svg |
NC_007005:3199820 | 3199820 | 3239802 | 39983 | Pseudomonas syringae pv. syringae B728a, complete genome | 1e-33 | 153 | BLASTN svg | BLASTP svg |
NC_011386:3723019* | 3723019 | 3748999 | 25981 | Oligotropha carboxidovorans OM5, complete genome | 1e-24 | 123 | BLASTN svg | BLASTP svg |
NC_007925:3933765 | 3933765 | 3955247 | 21483 | Rhodopseudomonas palustris BisB18, complete genome | 1e-21 | 113 | BLASTN svg | BLASTP svg |
NC_009140:121107* | 121107 | 144592 | 23486 | Salmonella enterica enterica sv Newport str. SL254, complete | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_009349:78000* | 78000 | 101716 | 23717 | Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_014500:842493 | 842493 | 880596 | 38104 | Dickeya dadantii 3937 chromosome, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |