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Query: NC_012668:3037345 Vibrio cholerae MJ-1236 chromosome 1, complete sequence

Start: 3037345, End: 3065178, Length: 27834

Host Lineage: Vibrio cholerae; Vibrio; Vibrionaceae; Vibrionales; Proteobacteria; Bacteria

General Information: Vibrio cholerae MJ-1236 is a toxigenic O1 El Tor Inaba strain from Matlab, Bangladesh, 1994 that represents the "Matlab variant" of El Tor. This genus is abundant in marine or freshwater environments such as estuaries, brackish ponds, or coastal areas; regions that provide an important reservoir for the organism in between outbreaks of the disease. Vibrio can affect shellfish, finfish, and other marine animals and a number of species are pathogenic for humans. Vibrio cholerae can colonize the mucosal surface of the small intestines of humans where it will cause cholera, a severe and sudden onset diarrheal disease. One famous outbreak was traced to a contaminated well in London in 1854 by John Snow, and epidemics, which can occur with extreme rapidity, are often associated with conditions of poor sanitation. The disease has a high lethality if left untreated, and millions have died over the centuries. There have been seven major pandemics between 1817 and today. Six were attributed to the classical biotype, while the 7th, which started in 1961, is associated with the El Tor biotype.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011138:3182807*3182807321165528849Alteromonas macleodii 'Deep ecotype', complete genome06181BLASTN svgBLASTP svg
NC_018679:24120002412000243472222723Alteromonas macleodii str. 'Balearic Sea AD45' chromosome, complete05779BLASTN svgBLASTP svg
NC_008345:41078474107847413795830112Shewanella frigidimarina NCIMB 400, complete genome05620BLASTN svgBLASTP svg
NC_003384:15715815715818443827281Salmonella enterica subsp. enterica serovar Typhi str. CT18 plasmid05531BLASTN svgBLASTP svg
NC_010410:36068263606826369540988584Acinetobacter baumannii AYE, complete genome04440BLASTN svgBLASTP svg
NC_010554:26468062646806272651179706Proteus mirabilis HI4320, complete genome04171BLASTN svgBLASTP svg
NC_004741:25930122593012261557622565Shigella flexneri 2a str. 2457T, complete genome03663BLASTN svgBLASTP svg
NC_010545:1781393*1781393180797326581Corynebacterium urealyticum DSM 7109, complete genome03429BLASTN svgBLASTP svg
NC_011770:28042182804218282883824621Pseudomonas aeruginosa LESB58, complete genome03354BLASTN svgBLASTP svg
NC_009651:19909199094332823420Klebsiella pneumoniae subsp. pneumoniae MGH 78578 plasmid pKPN5,03198BLASTN svgBLASTP svg
NC_008750:12533541253354128321029857Shewanella sp. W3-18-1, complete genome3e-179636BLASTN svgBLASTP svg
NC_011751:49925004992500501338720888Escherichia coli UMN026 chromosome, complete genome1e-156561BLASTN svgBLASTP svg
NC_007005:31998203199820323980239983Pseudomonas syringae pv. syringae B728a, complete genome1e-33153BLASTN svgBLASTP svg
NC_011386:3723019*3723019374899925981Oligotropha carboxidovorans OM5, complete genome1e-24123BLASTN svgBLASTP svg
NC_007925:39337653933765395524721483Rhodopseudomonas palustris BisB18, complete genome1e-21113BLASTN svgBLASTP svg
NC_009140:121107*12110714459223486Salmonella enterica enterica sv Newport str. SL254, complete1e-0869.9BLASTN svgBLASTP svg
NC_009349:78000*7800010171623717Aeromonas salmonicida subsp. salmonicida A449 plasmid 4, complete8e-0763.9BLASTN svgBLASTP svg
NC_014500:84249384249388059638104Dickeya dadantii 3937 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg