Pre_GI: BLASTN Hits

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Query: NC_011205:3050235 Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853

Start: 3050235, End: 3077778, Length: 27544

Host Lineage: Salmonella enterica; Salmonella; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This is a bovine-adapted serovar that is genetically related to S. Enteritidis that lives in the bovine intestinal tract and can causes disease in humans. While rare in incidence, S. dublin infection classically produces a syndrome of sustained bacteremia with fever, resulting in high morbidity and mortality. This group of Enterobactericiae have pathogenic characteristics and are one of the most common causes of enteric infections (food poisoning) worldwide. They were named after the scientist Dr. Daniel Salmon who isolated the first organism, Salmonella choleraesuis from the intestine of a pig. The presence of several pathogenicity islands (PAIs) that encode various virulence factors allows Salmonella spp. to colonize and infect host organisms. There are two important PAIs, Salmonella pathogenicity island 1 and 2 (SPI-1 and SPI-2) that encode two different type III secretion systems for the delivery of effector molecules into the host cell that result in internalization of the bacteria which then leads to systemic spread.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_011080:29823462982346303624053895Salmonella enterica subsp. enterica serovar Newport str. SL254,031010BLASTN svgBLASTP svg
NC_003197:3005842*3005842306162755786Salmonella typhimurium LT2, complete genome030830BLASTN svgBLASTP svg
NC_011083:29803562980356299819217837Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,030790BLASTN svgBLASTP svg
NC_011149:29122192912219296814855930Salmonella enterica subsp. enterica serovar Agona str. SL483,030110BLASTN svgBLASTP svg
NC_010102:29674642967464302271055247Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,021960BLASTN svgBLASTP svg
NC_006905:29602602960260298690926650Salmonella enterica subsp. enterica serovar Choleraesuis str021700BLASTN svgBLASTP svg
NC_006511:28191282819128287100051873Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC020660BLASTN svgBLASTP svg
NC_004631:28424532842453287123828786Salmonella enterica subsp. enterica serovar Typhi Ty2, complete020250BLASTN svgBLASTP svg
NC_003198:28565962856596290597449379Salmonella enterica subsp. enterica serovar Typhi str. CT18,020250BLASTN svgBLASTP svg
NC_010067:840938409311334429252Salmonella enterica subsp. arizonae serovar 62:z4,z23:--, complete07763BLASTN svgBLASTP svg
NC_008253:28285732828573285250723935Escherichia coli 536, complete genome3e-34155BLASTN svgBLASTP svg
NC_009801:30138383013838304465430817Escherichia coli E24377A, complete genome3e-34155BLASTN svgBLASTP svg
NC_004431:14439681443968146977025803Escherichia coli CFT073, complete genome4e-30141BLASTN svgBLASTP svg
NC_007946:12805081280508130218721680Escherichia coli UTI89, complete genome4e-30141BLASTN svgBLASTP svg
NC_008253:12284851228485125292524441Escherichia coli 536, complete genome4e-30141BLASTN svgBLASTP svg
NC_008563:12178041217804124159923796Escherichia coli APEC O1, complete genome4e-30141BLASTN svgBLASTP svg
NC_010488:48868488687267123804Escherichia coli SMS-3-5 plasmid pSMS35_130, complete sequence4e-30141BLASTN svgBLASTP svg
NC_011750:19788011978801200896030160Escherichia coli IAI39 chromosome, complete genome4e-30141BLASTN svgBLASTP svg
NC_011751:14460731446073147872932657Escherichia coli UMN026 chromosome, complete genome4e-30141BLASTN svgBLASTP svg
NC_020181:527592*52759257518147590Enterobacter aerogenes EA1509E, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_009792:92315592315594824825094Citrobacter koseri ATCC BAA-895, complete genome2e-1385.7BLASTN svgBLASTP svg
NC_013956:46278904627890465524427355Pantoea ananatis LMG 20103 chromosome, complete genome3e-1281.8BLASTN svgBLASTP svg
NC_014228:1712339*1712339175523642898Xenorhabdus nematophila ATCC 19061, complete genome3e-0661.9BLASTN svgBLASTP svg