Query: NC_009664:4377777 Kineococcus radiotolerans SRS30216, complete genome
Start: 4377777, End: 4401263, Length: 23487
Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria
General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
| Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
|---|
| NC_009664:4696961* | 4696961 | 4758416 | 61456 | Kineococcus radiotolerans SRS30216, complete genome | 5e-91 | 343 | BLASTN svg | BLASTP svg |
| NC_009664:4423829* | 4423829 | 4686013 | 262185 | Kineococcus radiotolerans SRS30216, complete genome | 2e-90 | 341 | BLASTN svg | BLASTP svg |
| NC_014391:3445672 | 3445672 | 3468894 | 23223 | Micromonospora aurantiaca ATCC 27029 chromosome, complete genome | 3e-55 | 224 | BLASTN svg | BLASTP svg |
| NC_015514:3911655 | 3911655 | 3937962 | 26308 | Cellulomonas fimi ATCC 484 chromosome, complete genome | 2e-19 | 105 | BLASTN svg | BLASTP svg |
| NC_008699:1067855* | 1067855 | 1116677 | 48823 | Nocardioides sp. JS614, complete genome | 2e-19 | 105 | BLASTN svg | BLASTP svg |
| NC_003155:622993 | 622993 | 654326 | 31334 | Streptomyces avermitilis MA-4680, complete genome | 2e-19 | 105 | BLASTN svg | BLASTP svg |
| NC_010572:4585500 | 4585500 | 4613280 | 27781 | Streptomyces griseus subsp. griseus NBRC 13350, complete genome | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
| NC_015957:8569721 | 8569721 | 8592853 | 23133 | Streptomyces violaceusniger Tu 4113 chromosome, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
| NC_003155:590500* | 590500 | 610703 | 20204 | Streptomyces avermitilis MA-4680, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
| NC_003888:4031299 | 4031299 | 4054099 | 22801 | Streptomyces coelicolor A3(2), complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
| NC_021177:5697210* | 5697210 | 5721877 | 24668 | Streptomyces fulvissimus DSM 40593, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_003888:4523500 | 4523500 | 4549560 | 26061 | Streptomyces coelicolor A3(2), complete genome | 4e-08 | 67.9 | BLASTN svg | BLASTP svg |
| NC_013739:717352* | 717352 | 748207 | 30856 | Conexibacter woesei DSM 14684, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_012669:96966 | 96966 | 121772 | 24807 | Beutenbergia cavernae DSM 12333, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_018750:5399316* | 5399316 | 5417126 | 17811 | Streptomyces venezuelae ATCC 10712, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
| NC_013131:8029621 | 8029621 | 8053011 | 23391 | Catenulispora acidiphila DSM 44928, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |