Pre_GI: BLASTN Hits

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Query: NC_009664:4377777 Kineococcus radiotolerans SRS30216, complete genome

Start: 4377777, End: 4401263, Length: 23487

Host Lineage: Kineococcus radiotolerans; Kineococcus; Kineosporiaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: This organism is a coccoid bacterium originally isolated from a high-level radioactive waste cell at the Savannah River Site in Aiken, South Carolina, USA, in 2002. Radiation-resistant bacterium. Similarly to Deinococcus radiodurans, K. radiotolerans exhibits a high degree of resistance to ionizing gamma-radiation. Cells are also highly resistant to dessication. Kineococcus-like 16S rRNA gene sequences have been reported from the Mojave desert and other arid environments where these bacteria seem to be ubiquitous. Because of its high resistance to ionizing radiation and desiccation, K. radiotolerans has potential use in applications involving in situ biodegradation of problematic organic contaminants from highly radioactive environments. Moreover, comparative functional genomic characterization of this species and other known radiotolerant bacteria such as Deinococcus radiodurans and Rubrobacter xylanophilus will shed light onto the strategies these bacteria use for survival in high radiation environments, as well as the evolutionary origins of radioresistance and their highly efficient DNA repair machinery. This organism produces an orange carotenoid-like pigment. Cell growth occurs between 11-41 degresss C, pH 5-9, and in the presence of <5% NaCl and <20% glucose. Carbohydrates and alcohols are primary growth substrates.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009664:4696961*4696961475841661456Kineococcus radiotolerans SRS30216, complete genome5e-91343BLASTN svgBLASTP svg
NC_009664:4423829*44238294686013262185Kineococcus radiotolerans SRS30216, complete genome2e-90341BLASTN svgBLASTP svg
NC_014391:34456723445672346889423223Micromonospora aurantiaca ATCC 27029 chromosome, complete genome3e-55224BLASTN svgBLASTP svg
NC_015514:39116553911655393796226308Cellulomonas fimi ATCC 484 chromosome, complete genome2e-19105BLASTN svgBLASTP svg
NC_008699:1067855*1067855111667748823Nocardioides sp. JS614, complete genome2e-19105BLASTN svgBLASTP svg
NC_003155:62299362299365432631334Streptomyces avermitilis MA-4680, complete genome2e-19105BLASTN svgBLASTP svg
NC_010572:45855004585500461328027781Streptomyces griseus subsp. griseus NBRC 13350, complete genome1e-1489.7BLASTN svgBLASTP svg
NC_015957:85697218569721859285323133Streptomyces violaceusniger Tu 4113 chromosome, complete genome5e-1177.8BLASTN svgBLASTP svg
NC_003155:590500*59050061070320204Streptomyces avermitilis MA-4680, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_003888:40312994031299405409922801Streptomyces coelicolor A3(2), complete genome2e-1075.8BLASTN svgBLASTP svg
NC_021177:5697210*5697210572187724668Streptomyces fulvissimus DSM 40593, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_003888:45235004523500454956026061Streptomyces coelicolor A3(2), complete genome4e-0867.9BLASTN svgBLASTP svg
NC_013739:717352*71735274820730856Conexibacter woesei DSM 14684, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_012669:969669696612177224807Beutenbergia cavernae DSM 12333, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_018750:5399316*5399316541712617811Streptomyces venezuelae ATCC 10712, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_013131:80296218029621805301123391Catenulispora acidiphila DSM 44928, complete genome3e-0661.9BLASTN svgBLASTP svg