Query: NC_009512:3251545 Pseudomonas putida F1, complete genome
Start: 3251545, End: 3277203, Length: 25659
Host Lineage: Pseudomonas putida; Pseudomonas; Pseudomonadaceae; Pseudomonadales; Proteobacteria; Bacteria
General Information: This strain was isolated from a polluted creek in Urbana, Illinois, USA by enrichment culture with ethylbenzyne as a sole source of carbon and energy. Its ability to degrade several different compounds including benzene, toluene, and ethylbenzene makes this species useful in the bioremediation of sites contaminated with multiple aromatic hydrocarbons. Underground gasoline tanks which have developed leaks can contaminate soil and water with a variety of these compounds. Bacteria belonging to the Pseudomonas group are common inhabitants of soil and water and can also be found on the surfaces of plants and animals. Pseudomonas bacteria are found in nature in a biofilm or in planktonic form. Pseudomonas bacteria are renowned for their metabolic versatility as they can grow under a variety of growth conditions and do not need any organic growth factors. As they are metabolically versatile, and well characterized, it makes them great candidates for biocatalysis, bioremediation and other agricultural applications. Certain strains have been used in the production of bioplastics.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
| Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
|---|
| NC_010170:3944228 | 3944228 | 3994783 | 50556 | Bordetella petrii, complete genome | 0 | 1935 | BLASTN svg | BLASTP svg |
| NC_015733:2720183 | 2720183 | 2760599 | 40417 | Pseudomonas putida S16 chromosome, complete genome | 1e-116 | 428 | BLASTN svg | BLASTP svg |
| NC_014118:987889 | 987889 | 1044503 | 56615 | Burkholderia sp. CCGE1002 chromosome chromosome 2, complete | 3e-71 | 278 | BLASTN svg | BLASTP svg |
| NC_008313:1956500 | 1956500 | 1975599 | 19100 | Ralstonia eutropha H16 chromosome 1, complete sequence | 2e-53 | 218 | BLASTN svg | BLASTP svg |
| NC_015424:3112637* | 3112637 | 3180033 | 67397 | Aeromonas veronii B565 chromosome, complete genome | 4e-18 | 101 | BLASTN svg | BLASTP svg |
| NC_008570:3220539* | 3220539 | 3280556 | 60018 | Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome | 5e-17 | 97.6 | BLASTN svg | BLASTP svg |
| NC_010170:4409683 | 4409683 | 4435297 | 25615 | Bordetella petrii, complete genome | 9e-16 | 93.7 | BLASTN svg | BLASTP svg |
| NC_007509:71954 | 71954 | 111001 | 39048 | Burkholderia sp. 383 chromosome 3, complete sequence | 3e-15 | 91.7 | BLASTN svg | BLASTP svg |
| NC_011662:2320100 | 2320100 | 2366474 | 46375 | Thauera sp. MZ1T, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
| NC_014837:3126543 | 3126543 | 3153058 | 26516 | Pantoea sp. At-9b chromosome, complete genome | 2e-13 | 85.7 | BLASTN svg | BLASTP svg |
| NC_015379:2482901 | 2482901 | 2503762 | 20862 | Pseudomonas brassicacearum subsp. brassicacearum NFM421 chromosome, | 8e-13 | 83.8 | BLASTN svg | BLASTP svg |
| NC_009921:3384116* | 3384116 | 3408953 | 24838 | Frankia sp. EAN1pec, complete genome | 3e-12 | 81.8 | BLASTN svg | BLASTP svg |
| NC_014910:465980* | 465980 | 507765 | 41786 | Alicycliphilus denitrificans BC chromosome, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
| NC_012880:1127997* | 1127997 | 1155964 | 27968 | Dickeya dadantii Ech703, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
| NC_020181:1653261* | 1653261 | 1683473 | 30213 | Enterobacter aerogenes EA1509E, complete genome | 5e-11 | 77.8 | BLASTN svg | BLASTP svg |
| NC_007951:3631772 | 3631772 | 3654972 | 23201 | Burkholderia xenovorans LB400 chromosome 1, complete sequence | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
| NC_007492:3332839 | 3332839 | 3354179 | 21341 | Pseudomonas fluorescens PfO-1, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
| NC_009348:1475955 | 1475955 | 1535710 | 59756 | Aeromonas salmonicida subsp. salmonicida A449, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
| NC_011894:3090000 | 3090000 | 3109783 | 19784 | Methylobacterium nodulans ORS 2060, complete genome | 8e-10 | 73.8 | BLASTN svg | BLASTP svg |
| NC_016002:2453919 | 2453919 | 2500295 | 46377 | Pseudogulbenkiania sp. NH8B, complete genome | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
| NC_007973:1411714 | 1411714 | 1442045 | 30332 | Ralstonia metallidurans CH34 chromosome 1, complete sequence | 3e-09 | 71.9 | BLASTN svg | BLASTP svg |
| NC_015663:3742738 | 3742738 | 3766558 | 23821 | Enterobacter aerogenes KCTC 2190 chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_014931:1642179* | 1642179 | 1670700 | 28522 | Variovorax paradoxus EPS chromosome, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_011666:1572487 | 1572487 | 1601763 | 29277 | Methylocella silvestris BL2, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
| NC_010002:528529* | 528529 | 550034 | 21506 | Delftia acidovorans SPH-1, complete genome | 5e-08 | 67.9 | BLASTN svg | BLASTP svg |
| NC_007005:3414579* | 3414579 | 3441252 | 26674 | Pseudomonas syringae pv. syringae B728a, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_007508:2756945 | 2756945 | 2779317 | 22373 | Xanthomonas campestris pv. vesicatoria str. 85-10, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_015138:3022414 | 3022414 | 3046729 | 24316 | Acidovorax avenae subsp. avenae ATCC 19860 chromosome, complete | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_015856:940625* | 940625 | 988051 | 47427 | Collimonas fungivorans Ter331 chromosome, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
| NC_013859:9500* | 9500 | 35599 | 26100 | Azospirillum sp. B510 plasmid pAB510e, complete sequence | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_012808:2886282 | 2886282 | 2909303 | 23022 | Methylobacterium extorquens AM1, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_009512:3282500 | 3282500 | 3315887 | 33388 | Pseudomonas putida F1, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_008699:2294361 | 2294361 | 2343378 | 49018 | Nocardioides sp. JS614, complete genome | 8e-07 | 63.9 | BLASTN svg | BLASTP svg |
| NC_013592:3212834 | 3212834 | 3248833 | 36000 | Dickeya dadantii Ech586, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
| NC_011988:1036618* | 1036618 | 1064967 | 28350 | Agrobacterium vitis S4 chromosome 2, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |