Pre_GI: BLASTN Hits

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Query: NC_009480:31412 Clavibacter michiganensis subsp. michiganensis NCPPB 382, complete

Start: 31412, End: 78542, Length: 47131

Host Lineage: Clavibacter michiganensis; Clavibacter; Microbacteriaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Phytopathogen that causes bacterial wilt and canker of tomato (Lycopersicon esculentum). This is considered to be the most important bacterial disease of tomato causing substantial economic losses worldwide. Bacteria enter the plant by wounds on root or stem and then find their way into the xylem allowing a massive systemic colonization. The first stage of the disease is characterized by unilateral wilting of leaves. Wilting then spreads to all leaves, canker lesions develop on the stem and the plant dies. If infection occurs at a late stage of plant development, plants can survive and yield fruit that may have spots, so called bird's eyes. Often the seeds will be infected and this has been the major source for outbreaks of Clavibacter michiganensis subsp. michiganensis infections in agriculture. Members of the Clavibacter genus are known to produce antimicrobial compounds.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009479:34001340015621322213Clavibacter michiganensis subsp. michiganensis NCPPB 382 plasmid02502BLASTN svgBLASTP svg
NC_010407:32960*329605163318674Clavibacter michiganensis subsp. sepedonicus chromosome, complete01292BLASTN svgBLASTP svg
NC_010408:798557985510599926145Clavibacter michiganensis subsp. sepedonicus plasmid pCSL1,0993BLASTN svgBLASTP svg
NC_010407:31326833132683315489022208Clavibacter michiganensis subsp. sepedonicus chromosome, complete3e-140507BLASTN svgBLASTP svg
NC_010399:13222132223559922378Clavibacter michiganensis subsp. sepedonicus plasmid pCS1, complete2e-122448BLASTN svgBLASTP svg
NC_010407:17752271775227180054825322Clavibacter michiganensis subsp. sepedonicus chromosome, complete2e-88335BLASTN svgBLASTP svg
NC_009664:4423829*44238294686013262185Kineococcus radiotolerans SRS30216, complete genome1e-25127BLASTN svgBLASTP svg
NC_018681:76925607692560771641223853Nocardia brasiliensis ATCC 700358 chromosome, complete genome2e-1283.8BLASTN svgBLASTP svg
NC_013510:81052581052583159921075Thermomonospora curvata DSM 43183, complete genome6e-0971.9BLASTN svgBLASTP svg
NC_015125:32840953284095330809924005Microbacterium testaceum StLB037, complete genome4e-0765.9BLASTN svgBLASTP svg
NC_015387:15572815572817893223205Marinithermus hydrothermalis DSM 14884 chromosome, complete genome6e-0661.9BLASTN svgBLASTP svg
NC_014923:1249267*1249267127291123645Mesorhizobium ciceri biovar biserrulae WSM1271 chromosome, complete6e-0661.9BLASTN svgBLASTP svg