Pre_GI: BLASTN Hits

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Query: NC_008593:1859861 Clostridium novyi NT, complete genome

Start: 1859861, End: 1883487, Length: 23627

Host Lineage: Clostridium novyi; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: This strain (NT) was created so that it lacks the lethal toxin. Injection of spores of this organism into mice harboring tumors resulted in an increased immune response and destruction of the tumor tissue in a method known as COBALT (combination bacteriolytic therapy) when the spores along with chemotherapeutic agents or radiation are co-administered. The anaerobic bacteria preferentially target hypoxic cancer tissue and stimulate immune responses to that tissue. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. Clostridium novyi is an anaerobic bacterium found in soil, aquatic sediments, and intestinal tract of both animals and humans. Some types produce lethal toxins.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_010674:2856997*2856997287924822252Clostridium botulinum B str. Eklund 17B, complete genome6e-180638BLASTN svgBLASTP svg
NC_003366:14277851427785145027522491Clostridium perfringens str. 13, complete genome2e-179636BLASTN svgBLASTP svg
NC_014328:2518081*2518081254764529565Clostridium ljungdahlii ATCC 49587 chromosome, complete genome5e-128466BLASTN svgBLASTP svg
NC_012781:19688271968827200279833972Eubacterium rectale ATCC 33656, complete genome4e-70274BLASTN svgBLASTP svg
NC_004663:16315216315218293619785Bacteroides thetaiotaomicron VPI-5482, complete genome2e-47198BLASTN svgBLASTP svg
NC_004565:20256*202563909918844Clostridium tetani E88 plasmid pE88, complete sequence1e-39172BLASTN svgBLASTP svg
NC_015737:981712*98171299969317982Clostridium sp. SY8519, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_010516:23051102305110232828423175Clostridium botulinum B1 str. Okra, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_010516:23282882328288235225123964Clostridium botulinum B1 str. Okra, complete genome8e-1693.7BLASTN svgBLASTP svg
NC_004557:45589545589547680920915Clostridium tetani E88, complete genome3e-1591.7BLASTN svgBLASTP svg