Pre_GI: BLASTN Hits

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Query: NC_008261:551513 Clostridium perfringens ATCC 13124, complete genome

Start: 551513, End: 574202, Length: 22690

Host Lineage: Clostridium perfringens; Clostridium; Clostridiaceae; Clostridiales; Firmicutes; Bacteria

General Information: The species type strain, originally isolated from a human gas gangrene patient. Causative agent of gas gangrene. This genus comprises about 150 metabolically diverse species of anaerobes that are ubiquitous in virtually all anoxic habitats where organic compounds are present, including soils, aquatic sediments and the intestinal tracts of animals and humans. This shape is attributed to the presence of endospores that develop under conditions unfavorable for vegetative growth and distend single cells terminally or sub-terminally. Spores germinate under conditions favorable for vegetative growth, such as anaerobiosis and presence of organic substrates. It is believed that present day Mollicutes (Eubacteria) have evolved regressively (i.e., by genome reduction) from gram-positive clostridia-like ancestors with a low GC content in DNA. Known opportunistic toxin-producing pathogens in animals and humans. Some species are capable of producing organic solvents (acetone, ethanol, etc,), molecular hydrogen and other useful compounds. This organism is a causative agent of a wide spectrum of necrotic enterotoxicoses. It also causes such animal diseases as lamb dysentery, ovine enterotoxemia (struck), pulpy kidney disease in lambs and other enterotoxemias in lambs and calves. It is commonly found in the environment (soil, sewage) and in the animal and human gastrointestinal tract as a member of the normal microflora. It is a fast growing (generation time 8-10 min) anaerobic flesh-eater. Active fermentative growth is accompanied by profuse generation of molecular hydrogen and carbon dioxide. It is also oxygen tolerant which makes it an easy object to work with in laboratories. C. perfringens have been developed and the species became a model organism in clostridial genetic studies. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. Known isolates belong to five distinct types (A, B, C, D, and E) that are distinguished based on the specific extracellular toxins they produce. All types produce the alpha toxin (phospholipase C). Type A strains that cause gas gangrene produce alpha toxin, theta (hemolysin), kappa (collagenase), mu (hyaluronidase), nu (DNAse) and neuraminidase which are all the enzymatic factors aiding the bacterium in invading and destruction of the host tissues. Type C strains produce alpha toxin, beta toxin and prefringolysin enteritis. In addition to alpha toxin, Type B strains produce beta toxin, types B and D produce the pore forming epsilon toxin and type E strains produce iota toxin.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_003366:61379861379863609922302Clostridium perfringens str. 13, complete genome03025BLASTN svgBLASTP svg
NC_008261:576923*57692359692520003Clostridium perfringens ATCC 13124, complete genome0892BLASTN svgBLASTP svg
NC_010723:34340003434000345694922950Clostridium botulinum E3 str. Alaska E43, complete genome0805BLASTN svgBLASTP svg
NC_010516:2877407*2877407289845321047Clostridium botulinum B1 str. Okra, complete genome7e-47196BLASTN svgBLASTP svg
NC_015958:81544281544283814622705Thermoanaerobacter wiegelii Rt8.B1 chromosome, complete genome1e-23119BLASTN svgBLASTP svg
NC_009848:31906193190619321885828240Bacillus pumilus SAFR-032, complete genome8e-19103BLASTN svgBLASTP svg
NC_013791:1291339*1291339131497523637Bacillus pseudofirmus OF4 chromosome, complete genome5e-1797.6BLASTN svgBLASTP svg
NC_009092:15995261599526164486445339Shewanella loihica PV-4, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_020210:33419763341976340522263247Geobacillus sp. GHH01, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_019978:23640002364000238561421615Halobacteroides halobius DSM 5150, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010674:36197223619722364030220581Clostridium botulinum B str. Eklund 17B, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008593:980731980731100500724277Clostridium novyi NT, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_015660:29648829648833673140244Geobacillus thermoglucosidasius C56-YS93 chromosome, complete4e-0867.9BLASTN svgBLASTP svg
NC_014166:2498500*2498500256909970600Arcobacter nitrofigilis DSM 7299 chromosome, complete genome4e-0867.9BLASTN svgBLASTP svg
NC_018664:20148720148722329221806Clostridium acidurici 9a chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006582:38278443827844384693219089Bacillus clausii KSM-K16, complete genome2e-0765.9BLASTN svgBLASTP svg