Query: NC_008228:3679949 Pseudoalteromonas atlantica T6c, complete genome
Start: 3679949, End: 3703686, Length: 23738
Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria
General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_008570:4594436* | 4594436 | 4636903 | 42468 | Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome | 3e-18 | 101 | BLASTN svg | BLASTP svg |
NC_014758:1207894 | 1207894 | 1238427 | 30534 | Calditerrivibrio nitroreducens DSM 19672 chromosome, complete | 1e-14 | 89.7 | BLASTN svg | BLASTP svg |
NC_015633:413587 | 413587 | 441843 | 28257 | Vibrio anguillarum 775 chromosome chromosome I, complete sequence | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_015577:3113907 | 3113907 | 3153948 | 40042 | Treponema azotonutricium ZAS-9 chromosome, complete genome | 1e-11 | 79.8 | BLASTN svg | BLASTP svg |
NC_005810:872672 | 872672 | 912108 | 39437 | Yersinia pestis biovar Microtus str. 91001, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_006155:1191307 | 1191307 | 1230667 | 39361 | Yersinia pseudotuberculosis IP 32953, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_008149:1122693 | 1122693 | 1158154 | 35462 | Yersinia pestis Nepal516, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_008150:2878450 | 2878450 | 2914439 | 35990 | Yersinia pestis Antiqua, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_010159:3033989 | 3033989 | 3057470 | 23482 | Yersinia pestis Angola, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_010465:3465351 | 3465351 | 3500599 | 35249 | Yersinia pseudotuberculosis YPIII, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_010634:1175404 | 1175404 | 1213210 | 37807 | Yersinia pseudotuberculosis PB1/+, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_004088:1196875 | 1196875 | 1234275 | 37401 | Yersinia pestis KIM, complete genome | 2e-10 | 75.8 | BLASTN svg | BLASTP svg |
NC_015186:755000 | 755000 | 774106 | 19107 | Acidiphilium multivorum AIU301, complete genome | 7e-10 | 73.8 | BLASTN svg | BLASTP svg |
NC_010645:1341475 | 1341475 | 1368540 | 27066 | Bordetella avium 197N, complete genome | 1e-08 | 69.9 | BLASTN svg | BLASTP svg |
NC_003197:2152994 | 2152994 | 2186966 | 33973 | Salmonella typhimurium LT2, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_003198:2109775 | 2109775 | 2144922 | 35148 | Salmonella enterica subsp. enterica serovar Typhi str. CT18, | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_004631:862002 | 862002 | 896599 | 34598 | Salmonella enterica subsp. enterica serovar Typhi Ty2, complete | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_010102:861860 | 861860 | 895182 | 33323 | Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7, | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_011080:2161696 | 2161696 | 2198375 | 36680 | Salmonella enterica subsp. enterica serovar Newport str. SL254, | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_011083:2200613 | 2200613 | 2234554 | 33942 | Salmonella enterica subsp. enterica serovar Heidelberg str. SL476, | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_015942:1167785 | 1167785 | 1193714 | 25930 | Acidithiobacillus ferrivorans SS3 chromosome, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_011027:1570955* | 1570955 | 1606796 | 35842 | Chlorobaculum parvum NCIB 8327, complete genome | 7e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_007912:2768363 | 2768363 | 2789662 | 21300 | Saccharophagus degradans 2-40, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_006511:854785 | 854785 | 895099 | 40315 | Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |