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Query: NC_008228:3679949 Pseudoalteromonas atlantica T6c, complete genome

Start: 3679949, End: 3703686, Length: 23738

Host Lineage: Pseudoalteromonas atlantica; Pseudoalteromonas; Pseudoalteromonadaceae; Alteromonadales; Proteobacteria; Bacteria

General Information: Isolated from a biofilm from San Diego Bay in California. Marine biofilm bacterium associated with shell disease in shellfish. A common marine bacterium that exists both in the water column, and in biofilms attached to surfaces. This organism produces a well characterized, commercially important agarase. Pseudoalteromonas atlantica has been isolated from lesions on crabs with shell disease. Shell disease is characterized by progressive degradation of the shell, often leading to an infection of the hemolymph (blood) and may be caused by Pseudoalteromonas, Alteromonas, Vibrio, or other marine organisms. In addition to producing extracellular enzymes which attack the shell, Pseudoalteromonas atlantica produces a the lipopolysaccharide which has been shown to be a potential virulence factor in shell disease.

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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_008570:4594436*4594436463690342468Aeromonas hydrophila subsp. hydrophila ATCC 7966, complete genome3e-18101BLASTN svgBLASTP svg
NC_014758:12078941207894123842730534Calditerrivibrio nitroreducens DSM 19672 chromosome, complete1e-1489.7BLASTN svgBLASTP svg
NC_015633:41358741358744184328257Vibrio anguillarum 775 chromosome chromosome I, complete sequence1e-1179.8BLASTN svgBLASTP svg
NC_015577:31139073113907315394840042Treponema azotonutricium ZAS-9 chromosome, complete genome1e-1179.8BLASTN svgBLASTP svg
NC_005810:87267287267291210839437Yersinia pestis biovar Microtus str. 91001, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_006155:11913071191307123066739361Yersinia pseudotuberculosis IP 32953, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008149:11226931122693115815435462Yersinia pestis Nepal516, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_008150:28784502878450291443935990Yersinia pestis Antiqua, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010159:30339893033989305747023482Yersinia pestis Angola, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010465:34653513465351350059935249Yersinia pseudotuberculosis YPIII, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_010634:11754041175404121321037807Yersinia pseudotuberculosis PB1/+, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_004088:11968751196875123427537401Yersinia pestis KIM, complete genome2e-1075.8BLASTN svgBLASTP svg
NC_015186:75500075500077410619107Acidiphilium multivorum AIU301, complete genome7e-1073.8BLASTN svgBLASTP svg
NC_010645:13414751341475136854027066Bordetella avium 197N, complete genome1e-0869.9BLASTN svgBLASTP svg
NC_003197:21529942152994218696633973Salmonella typhimurium LT2, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_003198:21097752109775214492235148Salmonella enterica subsp. enterica serovar Typhi str. CT18,2e-0765.9BLASTN svgBLASTP svg
NC_004631:86200286200289659934598Salmonella enterica subsp. enterica serovar Typhi Ty2, complete2e-0765.9BLASTN svgBLASTP svg
NC_010102:86186086186089518233323Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7,2e-0765.9BLASTN svgBLASTP svg
NC_011080:21616962161696219837536680Salmonella enterica subsp. enterica serovar Newport str. SL254,2e-0765.9BLASTN svgBLASTP svg
NC_011083:22006132200613223455433942Salmonella enterica subsp. enterica serovar Heidelberg str. SL476,2e-0765.9BLASTN svgBLASTP svg
NC_015942:11677851167785119371425930Acidithiobacillus ferrivorans SS3 chromosome, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_011027:1570955*1570955160679635842Chlorobaculum parvum NCIB 8327, complete genome7e-0763.9BLASTN svgBLASTP svg
NC_007912:27683632768363278966221300Saccharophagus degradans 2-40, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_006511:85478585478589509940315Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC3e-0661.9BLASTN svgBLASTP svg