Pre_GI: BLASTN Hits

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Query: NC_007333:3360000 Thermobifida fusca YX, complete genome

Start: 3360000, End: 3377599, Length: 17600

Host Lineage: Thermobifida fusca; Thermobifida; Nocardiopsaceae; Actinomycetales; Actinobacteria; Bacteria

General Information: Produces thermostable enzymes. Members of this genus are distinguished from most actinomycetes by their ability to form clustered spores that attach directly to the substrate mycelia, and not to the aerial mycelia. Moreover, these bacteria do not produce aerial mycelia at all. M. fusca is the most thermophilic, with some growth detectable at up to 75 degrees C. The natural habitat of Thermobifida is self-heated organic materials, like rotting hay, compost, manure or urban waste piles, etc., which they share with other thermophilic and thermotolerant actinomycetes. Biological and physiological features of these bacteria are accordingly adapted to the conditions of such environments, namely the high temperatures and the presence of abundant plant materials and other bio-polymer substrates of natural origin. Actinomycetes are well suited for this environment because they generally grow as branching hyphae and are well adapted to penetration and degradation of insoluble substrates such as lignocellulose. Spores of Thermobifida are known to cause allergic respiratory diseases called mushroom worker disease and farmer's lung, which develop in agricultural workers who by the nature of their work happen to breathe in significant amounts of actinomycete spores from hay, compost, etc. Some isolates of this organism are able to mineralize plastic disposals and other anthropogenic xenobiotics. Thermobifidaare of particular interest because they produce multiple thermostable enzymes involved in the degradation of lignocellulose.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_009142:25655612565561258937023810Saccharopolyspora erythraea NRRL 2338, complete genome7e-102379BLASTN svgBLASTP svg
NC_014391:42154742154744451422968Micromonospora aurantiaca ATCC 27029 chromosome, complete genome5e-84319BLASTN svgBLASTP svg
NC_013159:1225866*1225866124823622371Saccharomonospora viridis DSM 43017, complete genome7e-65256BLASTN svgBLASTP svg
NC_009664:1434974*1434974145788622913Kineococcus radiotolerans SRS30216, complete genome1e-1695.6BLASTN svgBLASTP svg
NC_015656:381554*38155440733625783Frankia symbiont of Datisca glomerata chromosome, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_006087:345976*34597640567959704Leifsonia xyli subsp. xyli str. CTCB07, complete genome6e-1693.7BLASTN svgBLASTP svg
NC_012792:96229296229299068328392Variovorax paradoxus S110 chromosome 2, complete genome2e-1591.7BLASTN svgBLASTP svg
NC_015666:1849618*1849618187832428707Halopiger xanaduensis SH-6 chromosome, complete genome1e-1385.7BLASTN svgBLASTP svg
NC_015434:1313979*1313979133209918121Verrucosispora maris AB-18-032 chromosome, complete genome1e-1385.7BLASTN svgBLASTP svg
NC_014815:1490957*1490957151776526809Micromonospora sp. L5 chromosome, complete genome1e-1385.7BLASTN svgBLASTP svg
NC_014391:1226922*1226922125015223231Micromonospora aurantiaca ATCC 27029 chromosome, complete genome1e-1385.7BLASTN svgBLASTP svg
NC_011961:52883752883754823519399Thermomicrobium roseum DSM 5159 plasmid unnamed, complete sequence1e-1385.7BLASTN svgBLASTP svg
NC_003295:21117302111730213127819549Ralstonia solanacearum GMI1000, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_010545:1781393*1781393180797326581Corynebacterium urealyticum DSM 7109, complete genome6e-1383.8BLASTN svgBLASTP svg
NC_021150:3505234*3505234352968724454Azotobacter vinelandii CA6, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_015673:397947*39794742438426438Corynebacterium resistens DSM 45100 chromosome, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_014216:2538500*2538500256387025371Desulfurivibrio alkaliphilus AHT2 chromosome, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_012560:3505235*3505235352968824454Azotobacter vinelandii DJ, complete genome2e-1281.8BLASTN svgBLASTP svg
NC_012704:1641684*1641684166548523802Corynebacterium kroppenstedtii DSM 44385, complete genome9e-1279.8BLASTN svgBLASTP svg
NC_013235:1938889*1938889196008021192Nakamurella multipartita DSM 44233, complete genome3e-1177.8BLASTN svgBLASTP svg
NC_015315:79579979579982151125713Thermoproteus uzoniensis 768-20 chromosome, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_014532:29891852989185301261923435Halomonas elongata DSM 2581, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_008278:18450001845000186972124722Frankia alni ACN14a, complete genome1e-1075.8BLASTN svgBLASTP svg
NC_001263:2461941*2461941248301921079Deinococcus radiodurans R1 chromosome 1, complete sequence1e-1075.8BLASTN svgBLASTP svg
NC_013757:14996431499643151759917957Geodermatophilus obscurus DSM 43160, complete genome5e-1073.8BLASTN svgBLASTP svg
NC_014210:5309121*5309121533359924479Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111 chromosome,2e-0971.9BLASTN svgBLASTP svg
NC_019673:1275627*1275627131011934493Saccharothrix espanaensis DSM 44229 complete genome8e-0969.9BLASTN svgBLASTP svg
NC_014666:6940532*6940532696752226991Frankia sp. EuI1c chromosome, complete genome8e-0969.9BLASTN svgBLASTP svg
NC_013093:1157476*1157476117633118856Actinosynnema mirum DSM 43827, complete genome8e-0969.9BLASTN svgBLASTP svg
NC_006576:21769721769724078123085Synechococcus elongatus PCC 6301, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_007604:1383192*1383192140158818397Synechococcus elongatus PCC 7942, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_010002:30023543002354302560623253Delftia acidovorans SPH-1, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_013947:46039846039849522334826Stackebrandtia nassauensis DSM 44728 chromosome, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_014153:21874092187409221140623998Thiomonas intermedia K12 chromosome, complete genome3e-0867.9BLASTN svgBLASTP svg
NC_014106:54587*545877853323947Lactobacillus crispatus ST1, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_015387:1803938*1803938184009936162Marinithermus hydrothermalis DSM 14884 chromosome, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_015602:1810500*1810500183260222103Lactobacillus kefiranofaciens ZW3 chromosome, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_018528:65000*650009177626777Lactobacillus helveticus R0052 chromosome, complete genome5e-0763.9BLASTN svgBLASTP svg
NC_013729:2157785*2157785219409936315Kribbella flavida DSM 17836, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_009921:8147947*8147947818742439478Frankia sp. EAN1pec, complete genome2e-0661.9BLASTN svgBLASTP svg
NC_007510:33400083340008337541735410Burkholderia sp. 383 chromosome 1, complete sequence8e-0660BLASTN svgBLASTP svg
NC_007794:2839239*2839239287591536677Novosphingobium aromaticivorans DSM 12444, complete genome8e-0660BLASTN svgBLASTP svg
NC_008463:1912348*1912348195418241835Pseudomonas aeruginosa UCBPP-PA14, complete genome8e-0660BLASTN svgBLASTP svg
NC_010364:733558*73355876240228845Halobacterium salinarum R1, complete genome8e-0660BLASTN svgBLASTP svg
NC_012660:52423925242392526802925638Pseudomonas fluorescens SBW25 chromosome, complete genome8e-0660BLASTN svgBLASTP svg
NC_014378:131810*13181015448322674Acetohalobium arabaticum DSM 5501 chromosome, complete genome8e-0660BLASTN svgBLASTP svg
NC_014727:95875*9587511860222728Lactobacillus delbrueckii subsp. bulgaricus ND02 chromosome,8e-0660BLASTN svgBLASTP svg
NC_015320:273979*27397929615522177Archaeoglobus veneficus SNP6 chromosome, complete genome8e-0660BLASTN svgBLASTP svg
NC_002607:742886*74288677209929214Halobacterium sp. NRC-1, complete genome8e-0660BLASTN svgBLASTP svg