Query: NC_005126:589000 Photorhabdus luminescens subsp. laumondii TTO1, complete genome
Start: 589000, End: 618530, Length: 29531
Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria
General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.
Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!
Subject Island | Start | End | Length | Subject Host Description | E-value | Bit score | Visual BLASTN | Visual BLASTP |
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NC_005126:1315474 | 1315474 | 1351501 | 36028 | Photorhabdus luminescens subsp. laumondii TTO1, complete genome | 0 | 15040 | BLASTN svg | BLASTP svg |
NC_005126:1265071 | 1265071 | 1318800 | 53730 | Photorhabdus luminescens subsp. laumondii TTO1, complete genome | 0 | 10400 | BLASTN svg | BLASTP svg |
NC_005126:4333767 | 4333767 | 4395099 | 61333 | Photorhabdus luminescens subsp. laumondii TTO1, complete genome | 0 | 8086 | BLASTN svg | BLASTP svg |
NC_005126:4210500 | 4210500 | 4246783 | 36284 | Photorhabdus luminescens subsp. laumondii TTO1, complete genome | 0 | 6905 | BLASTN svg | BLASTP svg |
NC_012962:3864000* | 3864000 | 3892214 | 28215 | Photorhabdus asymbiotica, complete genome | 0 | 5216 | BLASTN svg | BLASTP svg |
NC_005126:1613818 | 1613818 | 1651438 | 37621 | Photorhabdus luminescens subsp. laumondii TTO1, complete genome | 0 | 3798 | BLASTN svg | BLASTP svg |
NC_012912:2174183 | 2174183 | 2200337 | 26155 | Dickeya zeae Ech1591, complete genome | 9e-115 | 422 | BLASTN svg | BLASTP svg |
NC_012214:1267589* | 1267589 | 1298860 | 31272 | Erwinia pyrifoliae Ep1/96, complete genome | 5e-79 | 303 | BLASTN svg | BLASTP svg |
NC_012962:3499900 | 3499900 | 3558715 | 58816 | Photorhabdus asymbiotica, complete genome | 7e-60 | 240 | BLASTN svg | BLASTP svg |
NC_012962:2587756 | 2587756 | 2639451 | 51696 | Photorhabdus asymbiotica, complete genome | 1e-58 | 236 | BLASTN svg | BLASTP svg |
NC_012962:1661683 | 1661683 | 1713905 | 52223 | Photorhabdus asymbiotica, complete genome | 1e-55 | 226 | BLASTN svg | BLASTP svg |
NC_012962:484899 | 484899 | 515206 | 30308 | Photorhabdus asymbiotica, complete genome | 4e-49 | 204 | BLASTN svg | BLASTP svg |
NC_014228:2883500 | 2883500 | 2920665 | 37166 | Xenorhabdus nematophila ATCC 19061, complete genome | 1e-45 | 192 | BLASTN svg | BLASTP svg |
NC_004547:3817656 | 3817656 | 3841096 | 23441 | Erwinia carotovora subsp. atroseptica SCRI1043, complete genome | 1e-36 | 163 | BLASTN svg | BLASTP svg |
NC_013421:385930* | 385930 | 404961 | 19032 | Pectobacterium wasabiae WPP163, complete genome | 8e-32 | 147 | BLASTN svg | BLASTP svg |
NC_012962:1068102 | 1068102 | 1121697 | 53596 | Photorhabdus asymbiotica, complete genome | 3e-28 | 135 | BLASTN svg | BLASTP svg |
NC_012962:3463644 | 3463644 | 3498411 | 34768 | Photorhabdus asymbiotica, complete genome | 3e-28 | 135 | BLASTN svg | BLASTP svg |
NC_012912:2285778 | 2285778 | 2310591 | 24814 | Dickeya zeae Ech1591, complete genome | 3e-22 | 115 | BLASTN svg | BLASTP svg |
NC_014228:3534378 | 3534378 | 3556044 | 21667 | Xenorhabdus nematophila ATCC 19061, complete genome | 3e-19 | 105 | BLASTN svg | BLASTP svg |
NC_012962:3933715 | 3933715 | 3985425 | 51711 | Photorhabdus asymbiotica, complete genome | 1e-15 | 93.7 | BLASTN svg | BLASTP svg |
NC_013716:3109700 | 3109700 | 3149905 | 40206 | Citrobacter rodentium ICC168, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_013421:2613137* | 2613137 | 2636822 | 23686 | Pectobacterium wasabiae WPP163, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_010634:4045794 | 4045794 | 4067620 | 21827 | Yersinia pseudotuberculosis PB1/+, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_006155:4105542 | 4105542 | 4127368 | 21827 | Yersinia pseudotuberculosis IP 32953, complete genome | 2e-07 | 65.9 | BLASTN svg | BLASTP svg |
NC_007947:485828 | 485828 | 508331 | 22504 | Methylobacillus flagellatus KT, complete genome | 9e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_015566:4662171 | 4662171 | 4687413 | 25243 | Serratia sp. AS12 chromosome, complete genome | 9e-07 | 63.9 | BLASTN svg | BLASTP svg |
NC_014500:2616423 | 2616423 | 2640175 | 23753 | Dickeya dadantii 3937 chromosome, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_010159:1101241 | 1101241 | 1125720 | 24480 | Yersinia pestis Angola, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_008150:3529430 | 3529430 | 3552926 | 23497 | Yersinia pestis Antiqua, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_005810:3238391 | 3238391 | 3260819 | 22429 | Yersinia pestis biovar Microtus str. 91001, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_004088:3955933 | 3955933 | 3980025 | 24093 | Yersinia pestis KIM, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |
NC_003143:645559 | 645559 | 667987 | 22429 | Yersinia pestis CO92, complete genome | 3e-06 | 61.9 | BLASTN svg | BLASTP svg |