Pre_GI: BLASTN Hits

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Query: NC_005126:589000 Photorhabdus luminescens subsp. laumondii TTO1, complete genome

Start: 589000, End: 618530, Length: 29531

Host Lineage: Photorhabdus luminescens; Photorhabdus; Enterobacteriaceae; Enterobacteriales; Proteobacteria; Bacteria

General Information: This strain was isolated on Trinidad and Tobago. It is a symbiont of the nematode Heterorhabditis bacteriophora. Bioluminescent bacterium. This organism is unusual in that it is symbiotic within one insect, and pathogenic in another, the only organism that is known to exhibit this dual phenotype. Enzymes are then released by the bacteria that result in rapid degradation of the insect body, allowing both bacteria and nematode to feed and reproduce. During this period Photorhabdus luminescens releases bacteriocidal products, including antibiotics and bacteriocins, that prevent infection of the larva by competitive microbes. The result is promotion of Photorhabdus luminescens-nematode interactions that result in continuation of the symbiotic relationship. In order to engage in a symbiotic relationship with the nematode and a pathogenic one with the insect larva, the bacterium encodes specific factors that encourage both. These include a large number of genes that code for secreted toxins and enzymes, as well as genes that encode products for the production of antibiotics and bacteriocins. Secretion of these products occurs by an array of systems including type I, type II, and type III secretion systems. The type III system is closely related to the Yersinia plasmid-encoded type III system. Genes that promote symbiotic relationships are also encoded on genomic islands on the chromosome including some that affect nematode development. Virulence genes appear to be active during exponential growth. Symbiotic genes appear to function during stationary phase (post-exponential) growth. The switch from one state to another is controlled. Photorhabdus luminescens is capable of giving off light, a complex process that requires the products of the lux operon.




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Islands with an asterisk (*) contain ribosomal proteins or RNA related elements and may indicate a False Positive Prediction!

Subject IslandStartEndLengthSubject Host DescriptionE-valueBit scoreVisual BLASTNVisual BLASTP
NC_005126:13154741315474135150136028Photorhabdus luminescens subsp. laumondii TTO1, complete genome015040BLASTN svgBLASTP svg
NC_005126:12650711265071131880053730Photorhabdus luminescens subsp. laumondii TTO1, complete genome010400BLASTN svgBLASTP svg
NC_005126:43337674333767439509961333Photorhabdus luminescens subsp. laumondii TTO1, complete genome08086BLASTN svgBLASTP svg
NC_005126:42105004210500424678336284Photorhabdus luminescens subsp. laumondii TTO1, complete genome06905BLASTN svgBLASTP svg
NC_012962:3864000*3864000389221428215Photorhabdus asymbiotica, complete genome05216BLASTN svgBLASTP svg
NC_005126:16138181613818165143837621Photorhabdus luminescens subsp. laumondii TTO1, complete genome03798BLASTN svgBLASTP svg
NC_012912:21741832174183220033726155Dickeya zeae Ech1591, complete genome9e-115422BLASTN svgBLASTP svg
NC_012214:1267589*1267589129886031272Erwinia pyrifoliae Ep1/96, complete genome5e-79303BLASTN svgBLASTP svg
NC_012962:34999003499900355871558816Photorhabdus asymbiotica, complete genome7e-60240BLASTN svgBLASTP svg
NC_012962:25877562587756263945151696Photorhabdus asymbiotica, complete genome1e-58236BLASTN svgBLASTP svg
NC_012962:16616831661683171390552223Photorhabdus asymbiotica, complete genome1e-55226BLASTN svgBLASTP svg
NC_012962:48489948489951520630308Photorhabdus asymbiotica, complete genome4e-49204BLASTN svgBLASTP svg
NC_014228:28835002883500292066537166Xenorhabdus nematophila ATCC 19061, complete genome1e-45192BLASTN svgBLASTP svg
NC_004547:38176563817656384109623441Erwinia carotovora subsp. atroseptica SCRI1043, complete genome1e-36163BLASTN svgBLASTP svg
NC_013421:385930*38593040496119032Pectobacterium wasabiae WPP163, complete genome8e-32147BLASTN svgBLASTP svg
NC_012962:10681021068102112169753596Photorhabdus asymbiotica, complete genome3e-28135BLASTN svgBLASTP svg
NC_012962:34636443463644349841134768Photorhabdus asymbiotica, complete genome3e-28135BLASTN svgBLASTP svg
NC_012912:22857782285778231059124814Dickeya zeae Ech1591, complete genome3e-22115BLASTN svgBLASTP svg
NC_014228:35343783534378355604421667Xenorhabdus nematophila ATCC 19061, complete genome3e-19105BLASTN svgBLASTP svg
NC_012962:39337153933715398542551711Photorhabdus asymbiotica, complete genome1e-1593.7BLASTN svgBLASTP svg
NC_013716:31097003109700314990540206Citrobacter rodentium ICC168, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_013421:2613137*2613137263682223686Pectobacterium wasabiae WPP163, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_010634:40457944045794406762021827Yersinia pseudotuberculosis PB1/+, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_006155:41055424105542412736821827Yersinia pseudotuberculosis IP 32953, complete genome2e-0765.9BLASTN svgBLASTP svg
NC_007947:48582848582850833122504Methylobacillus flagellatus KT, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_015566:46621714662171468741325243Serratia sp. AS12 chromosome, complete genome9e-0763.9BLASTN svgBLASTP svg
NC_014500:26164232616423264017523753Dickeya dadantii 3937 chromosome, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_010159:11012411101241112572024480Yersinia pestis Angola, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_008150:35294303529430355292623497Yersinia pestis Antiqua, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_005810:32383913238391326081922429Yersinia pestis biovar Microtus str. 91001, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_004088:39559333955933398002524093Yersinia pestis KIM, complete genome3e-0661.9BLASTN svgBLASTP svg
NC_003143:64555964555966798722429Yersinia pestis CO92, complete genome3e-0661.9BLASTN svgBLASTP svg